SMTL ID : 7a30.1

Intertwined dimer of the c-Src SH3 domain mutant Q128E

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.67 Å

Oligo State

homo-dimer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 14 residues within 4Å: Chain A: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Chain B: R.14, T.15, T.17, D.18, W.37, Y.50 Ligands: PGE.4 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Y.11, A:R.14, A:R.14, B:R.14, B:R.14 Water bridges: A:T.15, B:T.15 PGE.4: 14 residues within 4Å: Chain A: R.14, T.15, T.17, D.18, W.37, Y.50 Chain B: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Ligands: PGE.1 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:R.14, A:R.14, B:Y.11, B:R.14, B:R.14, B:D.18 Water bridges: A:T.15, B:T.15

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: Y.9 Chain B: T.33, N.54, Y.55 No protein-ligand interaction detected (PLIP) PEG.5: 4 residues within 4Å: Chain A: T.33, N.54, Y.55 Chain B: Y.9 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Camara-Artigas, A. et al., Intertwined dimer of the c-Src SH3 domain mutant Q128E. To be published

Release Date

2021-08-25

Peptides

Proto-oncogene tyrosine-protein kinase Src: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Proto-oncogene tyrosine-protein kinase Src