SMTL ID : 7a3b.1

Intertwined dimer of the c-Src SH3 domain mutant E106D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.91 Å

Oligo State

homo-dimer

Ligands

2 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.1: 15 residues within 4Å: Chain A: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Chain B: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Ligands: PGE.4 11 PLIP interactions: 6 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:Y.11, B:R.14, B:R.14, B:T.17, B:D.18, A:Y.11, A:R.14, A:R.14, A:T.17 Water bridges: B:T.15, A:T.15 PGE.4: 15 residues within 4Å: Chain A: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Chain B: Y.11, R.14, T.15, T.17, D.18, W.37, Y.50 Ligands: PGE.1 11 PLIP interactions: 6 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:Y.11, B:R.14, B:R.14, B:T.17, B:D.18, A:Y.11, A:R.14, A:R.14, A:T.17 Water bridges: B:T.15, A:T.15

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: Y.9 Chain B: T.33, N.54, Y.55 Ligands: GOL.3 No protein-ligand interaction detected (PLIP) GOL.3: 2 residues within 4Å: Chain B: T.33 Ligands: GOL.2 No protein-ligand interaction detected (PLIP) GOL.5: 5 residues within 4Å: Chain A: T.33, N.54, Y.55 Chain B: Y.9 Ligands: GOL.6 No protein-ligand interaction detected (PLIP) GOL.6: 2 residues within 4Å: Chain A: T.33 Ligands: GOL.5 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Camara-Artigas, A. et al., Intertwined dimer of the c-Src SH3 domain mutant E106D. To be published

Release Date

2021-08-25

Peptides

Proto-oncogene tyrosine-protein kinase Src: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Proto-oncogene tyrosine-protein kinase Src