SMTL ID : 7a3s.2 (1 other biounit)

Crystal structure of dengue 3 virus envelope glycoprotein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: W.229, N.230, R.231, K.232, E.233 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.232, A:E.233, A:E.233 Water bridges: A:R.231 Salt bridges: A:K.232 SO4.4: 3 residues within 4Å: Chain B: R.231, K.232, E.233 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:R.231, B:K.232, B:E.233, B:E.233 Salt bridges: B:K.232

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: N.67, K.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.67, A:K.118 NAG.3: 2 residues within 4Å: Chain A: H.149, N.153 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.153 NAG.5: 2 residues within 4Å: Chain B: N.67, K.118 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain B: H.149, N.153, Q.156 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.153, B:Q.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sharma, A. et al., The epitope arrangement on flavivirus particles contributes to Mab C10's extraordinary neutralization breadth across Zika and dengue viruses. Cell (2021)

Release Date

2021-12-08

Peptides

Genome polyprotein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

Genome polyprotein

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