SMTL ID : 7a41.1

MALT1 in complex with a NVS-MALT1 chemical probe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.13 Å

Oligo State

homo-dimer

Ligands

2 x QYQ: ~{N}-[(1~{S})-1-[4-[[2-chloranyl-7-[(1~{S})-1-methoxyethyl]pyrazolo[1,5-a]pyrimidin-6-yl]amino]phenyl]-2,2,2-tris(fluoranyl)ethyl]-~{N}-methyl-1,1-bis(oxidanylidene)thiane-4-carboxamide(Non-covalent)

QYQ.1: 21 residues within 4Å: Chain A: V.20, A.21, L.22, K.55, V.57, L.59, L.62, Y.65, E.66, N.69, A.70, E.73, F.74, L.77, Q.255, W.256, A.259, Q.352, K.355, I.388, L.391 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.57, A:V.57, A:L.59, A:A.70, A:E.73, A:L.77, A:A.259, A:I.388 Hydrogen bonds: A:N.69 Halogen bonds: A:K.55 QYQ.3: 21 residues within 4Å: Chain B: V.20, A.21, L.22, K.55, V.57, L.59, L.62, Y.65, E.66, N.69, A.70, E.73, F.74, L.77, Q.255, W.256, A.259, Q.352, K.355, I.388, L.391 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.59, B:A.70, B:E.73, B:F.74, B:L.77, B:A.259, B:I.388 Hydrogen bonds: B:N.69

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 8 residues within 4Å: Chain B: L.35, A.37, P.38, D.138, M.139, C.140, C.169, G.185 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Q.222 Salt bridges: B:D.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Renatus, M., MALT1 in complex with a NVS-MALT1 chemical probe. Not Published

Release Date

2020-12-02

Peptides

Mucosa-associated lymphoid tissue lymphoma translocation protein 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Mucosa-associated lymphoid tissue lymphoma translocation protein 1

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