SMTL ID : 7a59.1

Crimean-Congo Hemorrhagic Fever Virus Envelope Glycoprotein Gc W1191H/W1197A/W1199A Mutant in Postfusion Conformation (Orthorhombic Crystal Form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-trimer

Ligands

1 x NAG- NAG- BMA- MAN- FUC: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-FUC.1: 3 residues within 4Å: Chain B: H.514 Chain C: H.303, N.305 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: H.303, N.305, T.306 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.306 Hydrogen bonds: A:H.303, A:N.305 NAG.7: 3 residues within 4Å: Chain B: H.303, N.305, T.306 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:H.303

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: R.228, N.229 Chain B: N.229 Chain C: N.229 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: D.312, G.313 Chain B: G.313 Chain C: D.312, G.313 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: T.397 Chain B: R.65 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain B: S.359, K.360, R.361 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain C: H.396, T.397 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain C: E.505, Q.506 Ligand excluded by PLIP

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 12 residues within 4Å: Chain A: K.143, D.315, L.316, D.317 Chain B: K.143, D.315, L.316, D.317 Chain C: K.143, D.315, L.316, D.317 6 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: B:D.317, C:L.316, A:D.317 Salt bridges: B:K.143, C:K.143, A:K.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mishra, A.K. et al., Structural basis of synergistic neutralization of Crimean-Congo hemorrhagic fever virus by human antibodies. Science (2022)

Release Date

2021-10-06

Peptides

Envelopment polyprotein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Envelopment polyprotein