SMTL ID : 7a5e.1 (1 other biounit)

OSM-3 kinesin motor domain complexed with Mg.AMPPNP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 17 residues within 4Å: Chain A: R.11, R.13, P.14, Q.89, T.90, G.91, S.92, G.93, K.94, T.95, F.96, N.201, S.204, S.205, A.235, G.236 Ligands: MG.2 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:R.11, A:T.90, A:T.90, A:G.91, A:S.92, A:G.93, A:K.94, A:K.94, A:T.95, A:F.96, A:N.201, A:S.204, A:S.205, A:S.205, A:G.236 Water bridges: A:R.11, A:R.11, A:S.205, A:S.205, A:R.206, A:R.206 pi-Stacking: A:F.96, A:F.96

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.95, S.205 Ligands: ANP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.95, A:S.205, H2O.1, H2O.1

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: Y.140, R.145, K.153, H.194 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:R.145, A:K.153, A:H.194 SO4.4: 5 residues within 4Å: Chain A: R.164, Y.167, V.168, A.169, G.170 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.170 Salt bridges: A:R.164

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 8 residues within 4Å: Chain A: L.137, Y.167, V.168, L.171, T.212, Y.214, K.228, N.230 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:V.168, A:T.212, A:K.228, A:N.230, A:N.230 Water bridges: A:K.228, A:K.228 GOL.6: 8 residues within 4Å: Chain A: N.81, P.162, D.163, R.164, G.165, D.291, N.296, N.335 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.81, A:D.291, A:N.296 Water bridges: A:N.81, A:N.296 GOL.7: 4 residues within 4Å: Chain A: A.3, E.4, S.5, K.329 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.5, A:K.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Varela, P.F. et al., Structural snapshots of the kinesin-2 OSM-3 along its nucleotide cycle: implications for the ATP hydrolysis mechanism. Febs Open Bio (2021)

Release Date

2021-02-03

Peptides

Osmotic avoidance abnormal protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Osmotic avoidance abnormal protein 3

Related Entries With Identical Sequence