SMTL ID : 7a5o.1

Human MUC2 AAs 21-1397

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-10-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: E.941, S.943, H.1132, N.1134 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain C: E.941, S.943, H.1132, N.1134 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain D: E.941, S.943, H.1132, N.1134 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain E: E.941, S.943, H.1132, N.1134 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain G: E.941, S.943, H.1132, N.1134 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain H: E.941, S.943, H.1132, N.1134 No protein-ligand interaction detected (PLIP)

30 x CA: CALCIUM ION(Non-covalent)

CA.7: 6 residues within 4Å: Chain A: N.1290, D.1292, D.1302, E.1304, D.1361, Y.1362 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.1292, A:D.1302, A:D.1302, A:D.1361, A:Y.1362 CA.8: 6 residues within 4Å: Chain A: D.1292, H.1293, S.1296, G.1297, D.1299, G.1301 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.1292, A:H.1293, A:S.1296, A:D.1299 CA.9: 6 residues within 4Å: Chain A: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:L.514, A:D.517, A:D.518 CA.10: 6 residues within 4Å: Chain A: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.151, A:L.155, A:E.160, A:E.160 CA.11: 6 residues within 4Å: Chain A: D.852, N.974, D.976, R.978, N.981, D.982 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.852, A:D.976, A:R.978, A:D.982 CA.14: 6 residues within 4Å: Chain B: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:L.514, B:D.517, B:D.518 CA.15: 6 residues within 4Å: Chain B: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.151, B:L.155, B:E.160, B:E.160 CA.18: 6 residues within 4Å: Chain C: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:L.514, C:D.517, C:D.518 CA.19: 6 residues within 4Å: Chain C: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.151, C:L.155, C:E.160, C:E.160 CA.20: 6 residues within 4Å: Chain C: D.852, N.974, D.976, R.978, N.981, D.982 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.852, C:D.976, C:R.978, C:D.982 CA.23: 6 residues within 4Å: Chain D: N.1290, D.1292, D.1302, E.1304, D.1361, Y.1362 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.1292, D:D.1302, D:D.1302, D:D.1361, D:Y.1362 CA.24: 6 residues within 4Å: Chain D: D.1292, H.1293, S.1296, G.1297, D.1299, G.1301 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.1292, D:H.1293, D:S.1296, D:D.1299 CA.25: 6 residues within 4Å: Chain D: D.852, N.974, D.976, R.978, N.981, D.982 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:D.852, D:D.976, D:R.978, D:D.982 CA.26: 6 residues within 4Å: Chain E: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:L.514, E:D.517, E:D.518 CA.27: 6 residues within 4Å: Chain E: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.151, E:L.155, E:E.160, E:E.160 CA.28: 6 residues within 4Å: Chain E: D.852, N.974, D.976, R.978, N.981, D.982 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.852, E:D.976, E:R.978, E:D.982 CA.29: 6 residues within 4Å: Chain E: N.1290, D.1292, D.1302, E.1304, D.1361, Y.1362 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:D.1292, E:D.1302, E:D.1302, E:D.1361, E:Y.1362 CA.30: 6 residues within 4Å: Chain E: D.1292, H.1293, S.1296, G.1297, D.1299, G.1301 4 PLIP interactions: 4 interactions with chain E Metal complexes: E:D.1292, E:H.1293, E:S.1296, E:D.1299 CA.33: 6 residues within 4Å: Chain F: N.1290, D.1292, D.1302, E.1304, D.1361, Y.1362 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:D.1292, F:D.1302, F:D.1302, F:D.1361, F:Y.1362 CA.34: 6 residues within 4Å: Chain F: D.1292, H.1293, S.1296, G.1297, D.1299, G.1301 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:D.1292, F:H.1293, F:S.1296, F:D.1299 CA.35: 6 residues within 4Å: Chain G: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:L.514, G:D.517, G:D.518 CA.36: 6 residues within 4Å: Chain G: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.151, G:L.155, G:E.160, G:E.160 CA.37: 6 residues within 4Å: Chain G: D.852, N.974, D.976, R.978, N.981, D.982 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:D.852, G:D.976, G:R.978, G:D.982 CA.40: 6 residues within 4Å: Chain H: D.852, N.974, D.976, R.978, N.981, D.982 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.852, H:D.976, H:R.978, H:D.982 CA.41: 6 residues within 4Å: Chain H: N.1290, D.1292, D.1302, E.1304, D.1361, Y.1362 5 PLIP interactions: 5 interactions with chain H Metal complexes: H:D.1292, H:D.1302, H:D.1302, H:D.1361, H:Y.1362 CA.42: 6 residues within 4Å: Chain H: D.1292, H.1293, S.1296, G.1297, D.1299, G.1301 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:D.1292, H:H.1293, H:S.1296, H:D.1299 CA.43: 6 residues within 4Å: Chain I: D.383, N.510, N.512, L.514, D.517, D.518 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:L.514, I:D.517, I:D.518 CA.44: 6 residues within 4Å: Chain I: D.29, D.151, N.153, L.155, S.159, E.160 4 PLIP interactions: 4 interactions with chain I Metal complexes: I:D.151, I:L.155, I:E.160, I:E.160 CA.47: 6 residues within 4Å: Chain J: N.1290, D.1292, D.1302, E.1304, D.1361, Y.1362 5 PLIP interactions: 5 interactions with chain J Metal complexes: J:D.1292, J:D.1302, J:D.1302, J:D.1361, J:Y.1362 CA.48: 6 residues within 4Å: Chain J: D.1292, H.1293, S.1296, G.1297, D.1299, G.1301 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:D.1292, J:H.1293, J:S.1296, J:D.1299

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.12: 3 residues within 4Å: Chain A: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.142, A:N.143 NAG.13: 3 residues within 4Å: Chain A: W.627, N.650, D.682 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.682, A:D.682 NAG.16: 3 residues within 4Å: Chain B: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.142, B:N.143 NAG.17: 3 residues within 4Å: Chain B: W.627, N.650, D.682 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.682, B:D.682 NAG.21: 3 residues within 4Å: Chain C: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.142, C:N.143 NAG.22: 3 residues within 4Å: Chain C: W.627, N.650, D.682 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.682, C:D.682, C:D.682 NAG.31: 3 residues within 4Å: Chain E: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:R.142, E:N.143 NAG.32: 3 residues within 4Å: Chain E: W.627, N.650, D.682 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:D.682, E:D.682, E:D.682 NAG.38: 3 residues within 4Å: Chain G: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:R.142, G:N.143 NAG.39: 3 residues within 4Å: Chain G: W.627, N.650, D.682 3 PLIP interactions: 3 interactions with chain G Hydrogen bonds: G:D.682, G:D.682, G:D.682 NAG.45: 3 residues within 4Å: Chain I: R.142, N.143, N.153 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:R.142, I:N.143 NAG.46: 3 residues within 4Å: Chain I: W.627, N.650, D.682 3 PLIP interactions: 3 interactions with chain I Hydrogen bonds: I:D.682, I:D.682, I:D.682

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Javitt, G. et al., Assembly Mechanism of Mucin and von Willebrand Factor Polymers. Cell (2020)

Release Date

2020-10-21

Peptides

Mucin-2: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

Mucin-2