- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 5 residues within 4Å:- Chain A: R.13, R.36, G.37, D.98, R.99
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.13
- Water bridges: A:R.99
GOL.3: 4 residues within 4Å:- Chain A: R.40, R.62, A.63, G.65
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.40, A:R.40, A:R.62, A:G.65
- Water bridges: A:R.62
GOL.4: 10 residues within 4Å:- Chain A: P.46, V.47, G.48, A.55, L.56, V.61, T.287, T.349, I.353
- Ligands: R1E.7
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.47, A:L.56
- Water bridges: A:T.287, A:T.287
GOL.10: 5 residues within 4Å:- Chain B: R.13, R.36, G.37, D.98, R.99
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:R.13
- Water bridges: B:R.99
GOL.11: 4 residues within 4Å:- Chain B: R.40, R.62, A.63, G.65
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.40, B:R.40, B:R.62, B:G.65
- Water bridges: B:R.62
GOL.12: 10 residues within 4Å:- Chain B: P.46, V.47, G.48, A.55, L.56, V.61, T.287, T.349, I.353
- Ligands: R1E.15
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:V.47, B:L.56
- Water bridges: B:T.287, B:T.287
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 5 residues within 4Å:- Chain A: R.15, R.185, G.224, F.225, D.226
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.15, A:R.185, A:F.225
- Water bridges: A:R.15, A:R.185
EDO.6: 9 residues within 4Å:- Chain A: G.107, V.110, M.111, V.124, F.157, D.158, E.159, S.160, W.180
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.160, A:S.160
EDO.13: 5 residues within 4Å:- Chain B: R.15, R.185, G.224, F.225, D.226
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:R.15, B:R.185, B:F.225
- Water bridges: B:R.15, B:R.185
EDO.14: 9 residues within 4Å:- Chain B: G.107, V.110, M.111, V.124, F.157, D.158, E.159, S.160, W.180
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.160, B:S.160
- 2 x R1E: trans-4,4-difluorocyclopentane-1,2-diol(Non-covalent)
R1E.7: 9 residues within 4Å:- Chain A: G.48, A.55, L.56, P.58, V.61, I.69, M.95, W.97
- Ligands: GOL.4
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:V.61, A:I.69, A:M.95
- Water bridges: A:L.56, A:M.95
R1E.15: 9 residues within 4Å:- Chain B: G.48, A.55, L.56, P.58, V.61, I.69, M.95, W.97
- Ligands: GOL.12
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:V.61, B:I.69, B:M.95
- Water bridges: B:L.56, B:M.95
- 2 x RGN: (1~{R},2~{R})-4,4-bis(fluoranyl)cyclopentane-1,2-diol(Non-covalent)
RGN.8: 6 residues within 4Å:- Chain A: P.58, E.59, R.62, G.96, W.97, D.98
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.98
- Water bridges: A:D.98, A:R.99
RGN.16: 6 residues within 4Å:- Chain B: P.58, E.59, R.62, G.96, W.97, D.98
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.98
- Water bridges: B:D.98, B:R.99
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, D. et al., Targeting a Cryptic Pocket in a Protein-Protein Contact by Disulfide-Induced Rupture of a Homodimeric Interface. Acs Chem.Biol. (2021)
- Release Date
- 2021-06-16
- Peptides
- Queuine tRNA-ribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.59 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x ZN: ZINC ION(Non-covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x R1E: trans-4,4-difluorocyclopentane-1,2-diol(Non-covalent)
- 2 x RGN: (1~{R},2~{R})-4,4-bis(fluoranyl)cyclopentane-1,2-diol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Nguyen, D. et al., Targeting a Cryptic Pocket in a Protein-Protein Contact by Disulfide-Induced Rupture of a Homodimeric Interface. Acs Chem.Biol. (2021)
- Release Date
- 2021-06-16
- Peptides
- Queuine tRNA-ribosyltransferase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A