SMTL ID : 7a91.1

Dissociated S1 domain of SARS-CoV-2 Spike bound to ACE2 (Non-Uniform Refinement)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: S.422, S.547, N.548 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.422

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.55, T.57, Q.342 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.55, A:T.57 NAG.3: 2 residues within 4Å: Chain A: K.28, N.92 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.28, A:N.92 NAG.4: 2 residues within 4Å: Chain A: Q.103, N.105 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.105 NAG.5: 2 residues within 4Å: Chain A: V.318, N.324 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.324 NAG.6: 3 residues within 4Å: Chain A: F.287, N.434, E.435 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.435 NAG.8: 2 residues within 4Å: Chain B: F.369, N.374 No protein-ligand interaction detected (PLIP) NAG.9: 2 residues within 4Å: Chain B: N.362, Q.611 No protein-ligand interaction detected (PLIP)

1 x ZN: ZINC ION(Non-covalent)

ZN.7: 3 residues within 4Å: Chain A: H.376, H.380, E.404 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.376, A:H.380, A:E.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benton, D.J. et al., Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion. Nature (2020)

Release Date

2020-09-16

Peptides

Angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

Angiotensin-converting enzyme 2

Spike glycoprotein

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