SMTL ID : 7a94.1

SARS-CoV-2 Spike Glycoprotein with 1 ACE2 Bound

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-1-mer

Ligands

23 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: N.647, T.649 Ligand excluded by PLIP NAG.2: 3 residues within 4Å: Chain A: E.163, N.195, N.196 Ligand excluded by PLIP NAG.3: 3 residues within 4Å: Chain A: N.311, E.312, N.313 Ligand excluded by PLIP NAG.4: 2 residues within 4Å: Chain A: N.362, Q.611 Ligand excluded by PLIP NAG.5: 3 residues within 4Å: Chain A: G.370, F.373, N.374 Ligand excluded by PLIP NAG.6: 3 residues within 4Å: Chain A: N.740, N.741 Chain B: D.827 Ligand excluded by PLIP NAG.7: 3 residues within 4Å: Chain A: N.748, L.953, Q.1102 Ligand excluded by PLIP NAG.8: 3 residues within 4Å: Chain A: N.1129, T.1131, H.1132 Ligand excluded by PLIP NAG.9: 3 residues within 4Å: Chain A: I.1163, V.1164, N.1165 Ligand excluded by PLIP NAG.10: 2 residues within 4Å: Chain B: N.195, N.196 Ligand excluded by PLIP NAG.11: 2 residues within 4Å: Chain B: N.311, N.313 Ligand excluded by PLIP NAG.12: 3 residues within 4Å: Chain B: N.647, T.649, Q.675 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain B: N.740, I.1161, G.1162 Chain C: D.827 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain B: N.748, L.953, Q.957, Q.1102 Ligand excluded by PLIP NAG.15: 2 residues within 4Å: Chain B: I.1163, N.1165 Ligand excluded by PLIP NAG.16: 3 residues within 4Å: Chain C: E.163, N.195, N.196 Ligand excluded by PLIP NAG.17: 3 residues within 4Å: Chain C: N.311, E.312, N.313 Ligand excluded by PLIP NAG.18: 5 residues within 4Å: Chain C: G.370, N.374, V.398, L.399, S.402 Ligand excluded by PLIP NAG.19: 2 residues within 4Å: Chain C: N.647, T.649 Ligand excluded by PLIP NAG.20: 2 residues within 4Å: Chain C: N.748, Q.957 Ligand excluded by PLIP NAG.21: 3 residues within 4Å: Chain C: A.737, K.1104, N.1105 Ligand excluded by PLIP NAG.22: 4 residues within 4Å: Chain C: N.1129, T.1131, H.1132, F.1134 Ligand excluded by PLIP NAG.23: 2 residues within 4Å: Chain C: I.1163, N.1165 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.24: 3 residues within 4Å: Chain D: H.376, H.380, E.404 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.376, D:H.380, D:E.404

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benton, D.J. et al., Receptor binding and priming of the spike protein of SARS-CoV-2 for membrane fusion. Nature (2020)

Release Date

2020-09-16

Peptides

Spike glycoprotein: ABC
Angiotensin-converting enzyme 2: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Spike glycoprotein

Angiotensin-converting enzyme 2

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