SMTL ID : 7a9d.1 (1 other biounit)

Crystal structure of H12 Haemagglutinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: G.37, N.294, G.310 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain C: G.37, N.294, G.310 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 3 residues within 4Å: Chain E: G.37, N.294, G.310 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: K.133, N.136, N.140, R.221 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.133, A:N.136 NAG.3: 3 residues within 4Å: Chain A: N.125, Q.161, T.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.162, A:T.162 NAG.5: 4 residues within 4Å: Chain C: K.133, N.136, N.140, R.221 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:K.133, C:N.136 NAG.6: 3 residues within 4Å: Chain C: N.125, Q.161, T.162 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.162, C:T.162 NAG.8: 4 residues within 4Å: Chain E: K.133, N.136, N.140, R.221 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.133, E:N.136 NAG.9: 3 residues within 4Å: Chain E: N.125, Q.161, T.162 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:T.162, E:T.162

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gamblin, S.J. et al., Hemagglutinin Structure and Activities. Cold Spring Harb Perspect Med (2021)

Release Date

2020-12-02

Peptides

Hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

B
B

D
B

F
B

Hemagglutinin

Hemagglutinin

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