SMTL ID : 7aay.1

Crystal structure of MerTK kinase domain in complex with Merestinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x L1X: N-(3-fluoro-4-{[1-methyl-6-(1H-pyrazol-4-yl)-1H-indazol-5-yl]oxy}phenyl)-1-(4-fluorophenyl)-6-methyl-2-oxo-1,2-dihydropyridine-3-carboxamide(Non-covalent)

L1X.1: 23 residues within 4Å: Chain A: G.28, E.29, V.35, A.51, K.53, E.71, C.74, M.75, F.78, V.83, I.84, L.101, P.102, F.103, M.104, L.144, F.149, H.151, M.160, V.169, A.170, D.171, F.172 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.35, A:A.51, A:E.71, A:F.78, A:V.83, A:I.84, A:L.101, A:F.149, A:D.171, A:F.172, A:F.172 Hydrogen bonds: A:E.29, A:M.104, A:D.171 pi-Stacking: A:F.172

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.231, P.232, L.249, K.250 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain A: R.117, M.228 Ligand excluded by PLIP CL.4: 6 residues within 4Å: Chain A: V.83, I.84, R.85, P.102, M.104, R.162 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pflug, A. et al., A-loop interactions in Mer tyrosine kinase give rise to inhibitors with two-step mechanism and long residence time of binding. Biochem.J. (2020)

Release Date

2020-10-28

Peptides

Tyrosine-protein kinase Mer: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase Mer