SMTL ID : 7aci.1

In meso structure of apolipoprotein N-acyltransferase, Lnt, from Escherichia coli in 9.8 monoacylglycerol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: L.293, A.322, T.332, S.383 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.383 GOL.2: 6 residues within 4Å: Chain A: L.36, F.40, A.66, L.67, V.208 Ligands: LH9.9 No protein-ligand interaction detected (PLIP) GOL.3: 4 residues within 4Å: Chain A: W.161, V.162, L.163, T.164 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.163, A:T.164 GOL.4: 3 residues within 4Å: Chain A: F.85, V.115 Ligands: LH9.11 No protein-ligand interaction detected (PLIP) GOL.5: 4 residues within 4Å: Chain A: M.525, S.526, L.527, R.528 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.526 GOL.6: 1 residues within 4Å: Ligands: LH9.12 No protein-ligand interaction detected (PLIP)

6 x LH9: [(2~{S})-2,3-bis(oxidanyl)propyl] heptadec-9-enoate(Non-covalent)

LH9.7: 18 residues within 4Å: Chain A: V.95, S.98, I.99, L.113, L.116, L.117, Y.120, E.287, K.355, V.359, P.360, F.361, G.362, E.363, C.407, W.435, F.436 Ligands: LH9.8 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.99, A:I.99, A:L.116, A:L.116, A:L.117, A:Y.120, A:F.361, A:F.361, A:F.361 Hydrogen bonds: A:S.98 LH9.8: 25 residues within 4Å: Chain A: W.94, V.95, L.117, Y.120, L.121, V.162, L.163, G.165, F.166, W.168, V.359, P.360, F.361, V.365, P.366, L.367, L.371, C.407, Y.408, N.432, D.433, W.435, F.436, H.445 Ligands: LH9.7 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.117, A:Y.120, A:L.163, A:F.166, A:F.166, A:F.166, A:P.360, A:V.365 Hydrogen bonds: A:Y.408, A:H.445 LH9.9: 14 residues within 4Å: Chain A: L.36, L.39, F.40, A.42, C.43, T.45, L.46, Y.51, I.59, S.90, N.93, I.440 Ligands: GOL.2, LH9.11 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.42, A:L.46 Hydrogen bonds: A:Y.51, A:N.93, A:N.93 LH9.10: 12 residues within 4Å: Chain A: L.34, A.77, A.78, F.81, C.82, Y.120, L.123, Y.124, G.126, L.127, V.162, L.163 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.77, A:F.81, A:L.123, A:L.123, A:Y.124, A:L.127, A:L.127, A:V.162 LH9.11: 17 residues within 4Å: Chain A: L.35, L.38, L.39, A.42, F.85, G.86, G.89, S.90, N.93, W.94, Y.96, V.97, I.111, V.114, V.115 Ligands: GOL.4, LH9.9 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.39, A:F.85, A:N.93, A:V.115 LH9.12: 19 residues within 4Å: Chain A: W.141, A.145, I.146, L.183, I.186, M.187, L.195, M.198, L.202, R.213, P.214, V.217, L.221, L.228, W.233, P.502, L.514, F.518 Ligands: GOL.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.186, A:L.221, A:L.221, A:W.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

van Dalsen, L. et al., 9.8 MAG. A new host lipid for in meso (lipid cubic phase) crystallization of integral membrane proteins. Cryst.Growth Des. (2020)

Release Date

2020-12-16

Peptides

Apolipoprotein N-acyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Apolipoprotein N-acyltransferase

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