SMTL ID : 7acs.1

The SARS-CoV-2 nucleocapsid phosphoprotein N-terminal domain in complex with 7mer dsRNA

Coordinates

PDB Format Compare

Method

SOLUTION NMR

Oligo State

monomer

Ligands

1 x C- A- C- U- G- A- C: RNA (5'-R(P*CP*AP*CP*UP*GP*AP*C)-3')(Non-covalent)

C-A-C-U-G-A-C.1: 16 residues within 4Å: Chain A: T.17, K.62, D.63, L.64, S.65, A.112, N.113, Y.132, R.137 Ligands: G-U-C-A-G-U-G.2, G-U-C-A-G-U-G.2, G-U-C-A-G-U-G.2, G-U-C-A-G-U-G.2, G-U-C-A-G-U-G.2, G-U-C-A-G-U-G.2, G-U-C-A-G-U-G.2 Protein-ligand interaction information (PLIP) not available

1 x G- U- C- A- G- U- G: RNA (5'-R(P*GP*UP*CP*AP*GP*UP*G)-3')(Non-covalent)

G-U-C-A-G-U-G.2: 23 residues within 4Å: Chain A: A.10, T.14, R.52, I.54, K.60, M.61, K.62, R.67, Y.69, R.109, P.111, A.112, N.113, A.115, A.116, E.134 Ligands: C-A-C-U-G-A-C.1, C-A-C-U-G-A-C.1, C-A-C-U-G-A-C.1, C-A-C-U-G-A-C.1, C-A-C-U-G-A-C.1, C-A-C-U-G-A-C.1, C-A-C-U-G-A-C.1 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dinesh, D.C. et al., Structural basis of RNA recognition by the SARS-CoV-2 nucleocapsid phosphoprotein. Plos Pathog. (2020)

Release Date

2020-11-04

Peptides

Nucleoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nucleoprotein

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