SMTL ID : 7adp.1

Cryo-EM structure of human ER membrane protein complex in GDN detergent

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: F.369, N.370 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.369 NAG.2: 3 residues within 4Å: Chain A: N.818, A.821 Chain H: R.170 2 PLIP interactions: 1 interactions with chain H, 1 interactions with chain A Hydrogen bonds: H:R.170, A:N.818 NAG.3: 2 residues within 4Å: Chain H: S.144, N.183 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:S.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miller-Vedam, L.E. et al., Structural and mechanistic basis of the EMC-dependent biogenesis of distinct transmembrane clients. Elife (2020)

Release Date

2020-12-02

Peptides

ER membrane protein complex subunit 1: A
ER membrane protein complex subunit 2: B
ER membrane protein complex subunit 3: C
ER membrane protein complex subunit 4: D
Membrane magnesium transporter 1: E
ER membrane protein complex subunit 6: F
ER membrane protein complex subunit 8: G
ER membrane protein complex subunit 10: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
H

H
I

Membrane

We predict this structure to be a membrane protein.
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ER membrane protein complex subunit 1

ER membrane protein complex subunit 2

ER membrane protein complex subunit 3

ER membrane protein complex subunit 4

Membrane magnesium transporter 1

ER membrane protein complex subunit 6

ER membrane protein complex subunit 8

ER membrane protein complex subunit 10

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