SMTL ID : 7adx.1 (1 other biounit)

SFX structure of dehaloperoxidase B in the oxyferrous form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 18 residues within 4Å: Chain A: F.25, E.32, N.35, F.36, H.56, K.59, V.60, M.64, L.84, M.87, Q.89, H.90, L.93, N.97, F.98, L.101, F.102, L.128 16 PLIP interactions: 16 interactions with chain A, Hydrophobic interactions: A:F.25, A:F.36, A:K.59, A:V.60, A:M.64, A:L.84, A:Q.89, A:Q.89, A:N.97, A:F.98, A:F.102, A:L.128 Hydrogen bonds: A:Q.89 Salt bridges: A:K.59 pi-Stacking: A:H.56 Metal complexes: A:H.90

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.2, F.3, K.4, D.117 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:F.3, A:K.4, A:D.117 Water bridges: A:G.2, A:Q.5, A:S.120 SO4.3: 3 residues within 4Å: Chain A: K.33, V.40, G.41 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.41 Salt bridges: A:K.33

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moreno Chicano, T. et al., SFX structure of dehaloperoxidase B from Amphitrite ornata in the oxyferrous form. To Be Published

Release Date

2021-10-06

Peptides

Dehaloperoxidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Dehaloperoxidase B

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