SMTL ID : 7aen.1 (1 other biounit)

Galectin-8 N-terminal carbohydrate recognition domain in complex with methyl 3-O-((7-carboxy)quinolin-2-yl)-methoxy)-beta-D-galactopyranoside

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x R8B: methyl 3-O-((7-carboxy) quinolin-2-yl)-methyl)-beta-D-galactopyranoside(Non-covalent)

R8B.1: 11 residues within 4Å: Chain A: R.39, Q.41, R.53, H.59, N.61, R.63, N.73, W.80, E.83, Y.135, G.136 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.135 Hydrogen bonds: A:R.39, A:R.39, A:Q.41, A:R.63, A:N.73 Water bridges: A:R.39, A:Q.41, A:R.63, A:R.63, A:K.137 Salt bridges: A:R.63

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: Y.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.7

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: L.104, K.105, D.106, K.107 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hassan, M. et al., Structure-Guided Design of d-Galactal Derivatives with High Affinity and Selectivity for the Galectin-8 N-Terminal Domain. Acs Med.Chem.Lett. (2021)

Release Date

2021-07-28

Peptides

Isoform 2 of Galectin-8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Isoform 2 of Galectin-8

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