SMTL ID : 7aev.1

Pressure wave-exposed human hemoglobin: pump/probe data (3500 indexed images)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.77 Å

Oligo State

hetero-2-2-mer

Ligands

4 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 16 residues within 4Å: Chain A: Y.41, F.42, H.44, H.57, K.60, A.64, L.82, L.85, H.86, L.90, N.96, F.97, L.100, V.131, L.135 Ligands: CMO.2 14 PLIP interactions: 14 interactions with chain A, Hydrophobic interactions: A:F.42, A:F.42, A:A.64, A:L.82, A:L.90, A:N.96, A:F.97, A:L.100, A:V.131, A:L.135 Salt bridges: A:H.44, A:H.57, A:K.60 Metal complexes: A:H.86 HEM.3: 18 residues within 4Å: Chain B: T.37, F.40, F.41, H.62, K.65, A.69, F.70, L.87, L.90, H.91, L.95, V.97, N.101, F.102, L.105, V.136, L.140 Ligands: CMO.4 19 PLIP interactions: 19 interactions with chain B, Hydrophobic interactions: B:T.37, B:F.40, B:F.41, B:F.41, B:F.41, B:A.69, B:F.70, B:L.87, B:L.90, B:L.95, B:V.97, B:N.101, B:F.102, B:L.105, B:V.136, B:L.140 Salt bridges: B:K.65 pi-Cation interactions: B:H.91 Metal complexes: B:H.91 HEM.5: 18 residues within 4Å: Chain C: Y.41, F.42, H.44, F.45, H.57, K.60, A.64, L.82, L.85, H.86, L.90, V.92, N.96, F.97, L.100, V.131, L.135 Ligands: CMO.6 15 PLIP interactions: 15 interactions with chain C, Hydrophobic interactions: C:Y.41, C:F.42, C:F.42, C:A.64, C:L.82, C:L.90, C:V.92, C:N.96, C:F.97, C:V.131, C:L.135 Salt bridges: C:H.44, C:K.60 pi-Cation interactions: C:H.86 Metal complexes: C:H.86 HEM.7: 15 residues within 4Å: Chain D: F.40, F.41, H.62, K.65, V.66, L.87, L.90, H.91, L.95, V.97, N.101, F.102, L.105, L.140 Ligands: CMO.8 17 PLIP interactions: 16 interactions with chain D, 1 Ligand-Ligand interactions Hydrophobic interactions: D:F.40, D:F.40, D:F.41, D:F.41, D:V.66, D:L.87, D:L.90, D:L.95, D:V.97, D:N.101, D:F.102, D:F.102, D:L.140 Salt bridges: D:K.65 pi-Cation interactions: D:H.91 Metal complexes: D:H.91, CMO.8

4 x CMO: CARBON MONOXIDE(Non-functional Binders)

CMO.2: 4 residues within 4Å: Chain A: L.28, H.57, V.61 Ligands: HEM.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.57 CMO.4: 5 residues within 4Å: Chain B: L.27, F.41, H.62, V.66 Ligands: HEM.3 No protein-ligand interaction detected (PLIP) CMO.6: 4 residues within 4Å: Chain C: L.28, H.57, V.61 Ligands: HEM.5 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:H.57 CMO.8: 5 residues within 4Å: Chain D: L.27, F.41, H.62, V.66 Ligands: HEM.7 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:H.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grunbein, M.L. et al., Effect of X-ray free-electron laser-induced shockwaves on haemoglobin microcrystals delivered in a liquid jet. Nat Commun (2021)

Release Date

2021-02-17

Peptides

Hemoglobin subunit alpha: AC
Hemoglobin subunit beta: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

C
CCC

B
BBB

D
DDD

Hemoglobin subunit alpha

Hemoglobin subunit beta

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