SMTL ID : 7aey.1

Salmonella typhimurium neuraminidase in complex with isocarba-DANA.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.92 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: C.39, C.100, I.101, V.102, S.177, G.178, L.179, Q.180 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:C.100, A:V.102, A:Q.180, A:Q.180 Water bridges: A:S.177 GOL.2: 5 residues within 4Å: Chain A: E.11, H.12, F.13, K.79, K.80 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.11, A:E.11, A:H.12 Water bridges: A:K.79, A:K.79 GOL.4: 10 residues within 4Å: Chain A: R.34, S.58, D.59, Y.304, R.306, A.334, S.335, G.336, A.337 Ligands: R8T.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.59, A:A.334 Water bridges: A:Y.304

1 x R8T: (3~{S},4~{S},5~{R})-4-acetamido-3-oxidanyl-5-[(1~{S},2~{R})-1,2,3-tris(oxidanyl)propyl]cyclohexane-1-carboxylic acid(Non-covalent)

R8T.3: 17 residues within 4Å: Chain A: R.34, I.35, R.53, D.59, Q.60, M.96, D.97, W.118, T.124, W.125, G.126, L.172, E.228, R.243, R.306, Y.339 Ligands: GOL.4 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:R.53, A:D.59, A:D.59, A:D.59, A:D.97, A:T.124, A:W.125, A:Y.339 Water bridges: A:Q.60, A:Q.60, A:Q.191, A:E.228, A:R.243 Salt bridges: A:R.34, A:R.243, A:R.306

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 3 residues within 4Å: Chain A: R.108, K.143, T.145 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.145 Water bridges: A:R.108 Salt bridges: A:R.108, A:K.143

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garman, E.F. et al., Salmonella typhimurium neuraminidase in complex with isocarba-DANA. To Be Published

Release Date

2020-10-21

Peptides

Sialidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Sialidase

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