SMTL ID : 7af2.1

Salmonella typhimurium neuraminidase mutant (D62G)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.79 Å

Oligo State

monomer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: E.11, H.12, F.13, K.79, K.80 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:E.11, A:H.12 Water bridges: A:H.12, A:T.14, A:T.14, A:K.79, A:K.79, A:K.79, A:K.79, A:K.79 GOL.2: 8 residues within 4Å: Chain A: Q.60, R.94, M.96, D.97, W.118, T.124, W.125, L.172 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.60, A:D.97, A:W.125, A:W.125 Water bridges: A:Q.191, A:E.228 GOL.3: 8 residues within 4Å: Chain A: T.41, S.42, V.102, A.103, N.104, E.109, R.345 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.104, A:E.109, A:R.345, A:R.345 GOL.4: 8 residues within 4Å: Chain A: C.39, I.101, V.102, S.177, G.178, L.179, Q.180 Ligands: GOL.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:V.102, A:V.102, A:V.102, A:Q.180, A:Q.180 Water bridges: A:S.177 GOL.6: 7 residues within 4Å: Chain A: K.117, N.119, T.135, D.136, W.137, D.138, H.159 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.117, A:W.137, A:D.138, A:H.159 Water bridges: A:D.86, A:N.119

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.5: 5 residues within 4Å: Chain A: R.243, H.275, Y.304, R.306, Y.339 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Y.339 Water bridges: A:R.243, A:Y.304, A:Y.304, A:R.306, A:R.306 Salt bridges: A:R.243, A:R.306

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Garman, E.F. et al., Salmonella typhimurium neuraminidase mutant (D62G). To Be Published

Release Date

2020-09-30

Peptides

Sialidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Sialidase