SMTL ID : 7afs.1

The structure of Artemis variant D37A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.34, H.36, H.116, D.137 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.34, A:H.36, A:H.116, A:D.137, H2O.2, H2O.5

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.229, H.255, C.257, C.273 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.229, A:H.255, A:C.257, A:C.273

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 8 residues within 4Å: Chain A: Q.142, G.143, E.144, A.145, A.146, D.328, Y.332 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.143, A:A.145, A:A.146 EDO.4: 7 residues within 4Å: Chain A: P.178, M.293, F.295, K.301, T.302, N.303, V.304 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.302, A:N.303 EDO.5: 10 residues within 4Å: Chain A: L.140, A.141, Q.142, G.143, E.144, A.145, E.325, D.328, F.329 Ligands: EDO.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.143, A:E.144, A:A.145, A:E.325, A:D.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yosaatmadja, Y. et al., Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition. Nucleic Acids Res. (2021)

Release Date

2020-10-28

Peptides

Protein artemis: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein artemis