SMTL ID : 7afu.1

The structure of Artemis variant H33A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.56 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.229, H.255, C.257, C.273 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.229, A:H.255, A:C.257, A:C.273

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: G.309, E.310, S.311, S.312 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.310, A:S.311, A:S.311 EDO.3: 6 residues within 4Å: Chain A: P.199, V.202, N.251, T.252, R.278, L.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.199, A:N.251, A:R.278 EDO.4: 4 residues within 4Å: Chain A: E.11, N.129, G.130, Q.161 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.161 Water bridges: A:N.129, A:N.129, A:Q.161 EDO.5: 4 residues within 4Å: Chain A: H.116, P.118, Y.215, I.242 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.116 Water bridges: A:Y.215 EDO.6: 7 residues within 4Å: Chain A: W.194, I.286, R.307, E.310, S.311, Y.313 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.313 EDO.7: 6 residues within 4Å: Chain A: L.190, S.193, W.194, R.197, Y.313 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.193, A:S.193, A:R.197 EDO.8: 3 residues within 4Å: Chain A: E.149, L.150, H.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.152 EDO.9: 4 residues within 4Å: Chain A: I.88, G.119, S.120, V.121 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.119 Water bridges: A:S.63 EDO.10: 5 residues within 4Å: Chain A: I.195, T.196, S.198, P.199, Q.253 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.253, A:Q.253 EDO.11: 3 residues within 4Å: Chain A: A.10, Y.164, Y.339 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:A.10, A:Y.164 EDO.12: 2 residues within 4Å: Chain A: P.91, V.108 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yosaatmadja, Y. et al., Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition. Nucleic Acids Res. (2021)

Release Date

2020-10-28

Peptides

Protein artemis: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein artemis