SMTL ID : 7agi.1

The structure of Artemis variant H35D

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.229, H.255, C.257, C.273 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.229, A:H.255, A:C.257, A:C.273

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: P.199, V.202, N.251, T.252, R.278, L.283 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.199, A:N.251, A:R.278 EDO.3: 5 residues within 4Å: Chain A: L.190, S.193, W.194, R.197, Y.313 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.197, A:R.197 EDO.4: 3 residues within 4Å: Chain A: N.303, I.305, R.307 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.305 Water bridges: A:N.303, A:R.307 EDO.5: 5 residues within 4Å: Chain A: H.116, C.117, P.118, Y.215, I.242 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.116, A:Y.215 EDO.6: 4 residues within 4Å: Chain A: E.11, N.129, G.130, Q.161 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.11, A:N.129, A:Q.161 EDO.7: 6 residues within 4Å: Chain A: G.143, E.144, A.145, A.146, D.328, Y.332 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.143, A:A.145, A:A.146 Water bridges: A:E.144 EDO.8: 5 residues within 4Å: Chain A: P.64, K.67, E.68, S.85, E.87 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.68, A:S.85, A:E.87 Water bridges: A:E.87 EDO.9: 3 residues within 4Å: Chain A: H.152, S.153, G.154 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yosaatmadja, Y. et al., Structural and mechanistic insights into the Artemis endonuclease and strategies for its inhibition. Nucleic Acids Res. (2021)

Release Date

2020-10-28

Peptides

Protein artemis: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein artemis