SMTL ID : 7ahf.1

Dimeric structure of the catalytic domain of the human ubiquitin-conjugating enzyme UBE2S L114E varaiant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 8 residues within 4Å: Chain A: F.79, T.81, K.82, I.83, V.88, G.89, A.90, G.92 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.81, A:I.83, A:G.89 Water bridges: A:N.130 EDO.3: 2 residues within 4Å: Chain B: E.48, L.59 No protein-ligand interaction detected (PLIP) EDO.4: 5 residues within 4Å: Chain B: P.27, P.28, D.29, G.30, I.31 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.29, B:G.30, B:I.31 EDO.5: 5 residues within 4Å: Chain B: K.82, I.83, F.84, N.130, L.151 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.83, B:N.130

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: R.101, D.102 Chain B: G.52, T.53, P.54, Y.55, L.120, I.121, P.123, Y.141, Y.144 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.121, B:Y.144, B:Y.144 Water bridges: B:I.121, B:H.122

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liess, A.K.L. et al., Structural analyses of the ubiquitin-conjugating enzyme UBE2S in different crystal forms. To Be Published

Release Date

2021-10-06

Peptides

Ubiquitin-conjugating enzyme E2 S: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Ubiquitin-conjugating enzyme E2 S