SMTL ID : 7aho.1

RUVBL1-RUVBL2 heterohexameric ring after binding of RNA helicase DHX34

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-mer

Ligands

3 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: S.37, H.38, H.40, G.58, L.59, V.60, P.92, G.93, T.94, G.95, K.96, T.97, A.98, Y.386, I.394, L.423, R.424 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.37, A:H.38, A:V.60, A:V.60, A:G.93, A:T.94, A:G.95, A:K.96, A:T.97, A:A.98 Salt bridges: A:H.38, A:K.96, A:R.424, A:R.424 ADP.2: 18 residues within 4Å: Chain B: S.37, H.38, H.40, G.58, L.59, V.60, Q.62, P.92, G.93, T.94, G.95, K.96, T.97, D.322, Y.386, I.394, L.423, R.424 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:S.37, B:V.60, B:G.93, B:T.94, B:G.95, B:K.96, B:T.97, B:T.97, B:T.97, B:D.322, B:Y.386, B:Y.386, B:R.424 Salt bridges: B:H.38, B:K.96, B:K.96 ADP.3: 17 residues within 4Å: Chain C: S.37, H.38, H.40, G.58, L.59, V.60, P.92, G.93, T.94, G.95, K.96, T.97, A.98, Y.386, I.394, L.423, R.424 15 PLIP interactions: 15 interactions with chain C Hydrogen bonds: C:V.60, C:G.93, C:T.94, C:G.95, C:K.96, C:T.97, C:T.97, C:T.97, C:A.98, C:Y.386, C:Y.386 Salt bridges: C:H.38, C:K.96, C:R.424, C:R.424

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lopez-Perrote, A. et al., Regulation of RUVBL1-RUVBL2 AAA-ATPases by the nonsense-mediated mRNA decay factor DHX34, as evidenced by Cryo-EM. Elife (2020)

Release Date

2020-11-25

Peptides

RuvB-like 1: ABC
RuvB-like 2: DEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

RuvB-like 1

RuvB-like 2