SMTL ID : 7ahu.2 (1 other biounit)

Anti-FX Fab of mim8 in complex with human FXa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x 0GJ: L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide(Covalent)

0GJ.1: 16 residues within 4Å: Chain C: H.42, Q.46, Y.85, D.179, A.180, C.181, Q.182, G.183, D.184, S.185, S.204, W.205, G.206, E.207, G.208, G.216 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:W.205 Hydrogen bonds: C:A.180, C:Q.182, C:G.183, C:S.185, C:S.204, C:G.206, C:G.208, C:G.208 Water bridges: C:A.210 Salt bridges: C:D.179

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain C: D.56, N.58, Q.61, E.62, E.63, E.66 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:N.58, C:Q.61, C:E.66, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ostergaard, H. et al., A factor VIIIa-mimetic bispecific antibody, Mim8, ameliorates bleeding upon severe vascular challenge in hemophilia A mice. Blood (2021)

Release Date

2021-07-07

Peptides

Anti-FX Fab of mim8 light chain: A
Anti-FX Fab of mim8 heavy chain: B
Coagulation factor X: C
Coagulation factor X: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

D
F

Anti-FX Fab of mim8 light chain

Anti-FX Fab of mim8 heavy chain

Coagulation factor X

Coagulation factor X

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