SMTL ID : 7akg.1

Crystal structure of STK17B with bound dovitinib

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: Y.30, S.50, S.52, H.95, E.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.50, A:S.50, A:E.96 Water bridges: A:K.51 EDO.2: 1 residues within 4Å: Chain A: G.185 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.185 EDO.3: 5 residues within 4Å: Chain A: E.36, R.39, V.44, R.46, F.61 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.36, A:R.39, A:R.46 Water bridges: A:E.103 EDO.4: 4 residues within 4Å: Chain A: P.232, F.233, N.244, N.249 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.234, A:N.249 Water bridges: A:D.251 EDO.5: 1 residues within 4Å: Chain A: E.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.255

1 x 38O: 4-amino-5-fluoro-3-[5-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]quinolin-2(1H)-one(Non-covalent)

38O.6: 14 residues within 4Å: Chain A: K.35, L.37, V.45, A.58, I.92, L.108, E.109, Y.110, A.111, A.112, G.113, G.114, L.163, V.176 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.37, A:A.58, A:I.92, A:L.108, A:L.108, A:V.176, A:V.176 Hydrogen bonds: A:L.37, A:E.109, A:A.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Picado, A. et al., A Chemical Probe for Dark Kinase STK17B Derives Its Potency and High Selectivity through a Unique P-Loop Conformation. J.Med.Chem. (2020)

Release Date

2020-12-02

Peptides

Serine/threonine-protein kinase 17B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine-protein kinase 17B

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