SMTL ID : 7alj.1

Structure of Drosophila Notch EGF domains 11-13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.52 Å

Oligo State

monomer

Ligands

1 x BGC- XYP: beta-D-xylopyranose-(1-3)-beta-D-glucopyranose(Post Translational Modification)

BGC-XYP.1: 7 residues within 4Å: Chain A: E.81, S.84, P.86, N.98, G.99, F.100, R.112 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.81, A:R.112, A:N.98, A:R.112

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 9 residues within 4Å: Chain A: D.78, I.79, D.80, E.81, D.95, K.96, I.97, N.98, G.99 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.78, A:I.79, A:D.95, A:K.96, H2O.1 CA.3: 5 residues within 4Å: Chain A: I.41, N.42, D.57, D.58, P.59 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:I.41, H2O.2

1 x FUC: alpha-L-fucopyranose(Post Translational Modification)

FUC.4: 6 residues within 4Å: Chain A: E.52, G.53, S.54, V.65, C.66, M.67 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.54

1 x BGC: beta-D-glucopyranose(Post Translational Modification)

BGC.5: 6 residues within 4Å: Chain A: E.43, C.44, S.46, P.48, F.62, Q.74 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.43, A:E.43 Water bridges: A:Q.74

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.6: 6 residues within 4Å: Chain A: F.70, T.71, G.72, T.73, I.77, I.79 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.72 Water bridges: A:F.70 NAG.7: 7 residues within 4Å: Chain A: R.25, C.26, N.27, C.28, F.32, T.33, G.34 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.25, A:C.26, A:C.28 Water bridges: A:G.34

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martins, T. et al., The conserved C2 phospholipid-binding domain in Delta contributes to robust Notch signalling. Embo Rep. (2021)

Release Date

2021-08-04

Peptides

Neurogenic locus Notch protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neurogenic locus Notch protein