SMTL ID : 7am4.1

Crystal structure of Peptiligase mutant - L217H/M222P

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: N.109, M.110, S.136, G.137, V.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.109, A:M.110 Water bridges: A:G.137 GOL.2: 3 residues within 4Å: Chain A: N.231, W.232, Q.236 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.231, A:Q.236 Water bridges: A:Q.236 GOL.3: 5 residues within 4Å: Chain A: N.25, V.26, D.111, L.226, P.230 5 PLIP interactions: 5 interactions with chain A Water bridges: A:S.24, A:N.25, A:N.25, A:D.111, A:D.111

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain A: V.4, S.5, Y.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.4, A:Y.6 SO4.5: 6 residues within 4Å: Chain A: S.92, G.93, Y.95, I.98, G.118, G.119 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.93, A:G.118, A:G.118 SO4.6: 3 residues within 4Å: Chain A: S.152, S.153, S.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.153, A:S.154 Water bridges: A:K.161 SO4.7: 3 residues within 4Å: Chain A: Q.94, Y.95, S.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.94, A:S.96 Water bridges: A:Y.95, A:Y.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toplak, A. et al., From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase. Comput Struct Biotechnol J (2021)

Release Date

2021-02-17

Peptides

Subtilisin BPN': A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Subtilisin BPN'