SMTL ID : 7am6.2 (2 other biounits)

Crystal structure of Peptiligase mutant - L217H/M222P/A225N/F189W

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x TAR: D(-)-TARTARIC ACID(Covalent)

TAR.1: 8 residues within 4Å: Chain A: H.64, S.116, N.146, S.209, G.210, T.211, C.212, P.213 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.146, A:N.146, A:C.212 Salt bridges: A:H.64, A:H.64

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: I.106, N.109, M.110, D.111, S.136, G.137, V.138 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.106, A:N.109, A:N.109, A:G.137 GOL.3: 6 residues within 4Å: Chain A: S.53, E.54, T.55, N.56, Q.59, K.85 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.55, A:N.56, A:N.61, A:K.85 GOL.4: 3 residues within 4Å: Chain A: Q.19, K.228, Q.266 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.19, A:K.228, A:Q.266 GOL.5: 5 residues within 4Å: Chain A: G.151, S.152, D.250, F.252, Y.253 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.151, A:S.152 GOL.6: 2 residues within 4Å: Chain A: T.233, T.235 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.233, A:T.235

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toplak, A. et al., From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase. Comput Struct Biotechnol J (2021)

Release Date

2021-02-17

Peptides

Subtilisin BPN': A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Subtilisin BPN'

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