SMTL ID : 7am8.1

Crystal structure of Omniligase mutant W189F

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x HIS: HISTIDINE(Non-covalent)

HIS.1: 6 residues within 4Å: Chain A: W.232, Q.236, S.239, N.243, H.267, H.268 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.236, A:S.239, A:N.243, A:H.268 pi-Stacking: A:W.232

1 x AKR: ACRYLIC ACID(Non-covalent)

AKR.2: 6 residues within 4Å: Chain A: H.64, N.146, H.208, G.210, T.211, C.212 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.146, A:C.212 Salt bridges: A:H.64, A:H.208

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 4 residues within 4Å: Chain A: S.37, S.38, H.39, L.42 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.42 NA.4: 5 residues within 4Å: Chain A: A.160, K.161, Y.162, P.163, V.165 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.162, A:V.165

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 6 residues within 4Å: Chain A: E.54, T.55, N.56, Q.59, N.61, K.85 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Toplak, A. et al., From thiol-subtilisin to omniligase: Design and structure of a broadly applicable peptide ligase. Comput Struct Biotechnol J (2021)

Release Date

2021-02-17

Peptides

Subtilisin BPN': A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Subtilisin BPN'