SMTL ID : 7anw.1

hSARM1 NAD+ complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 2.68 Å

Oligo State

homo-octamer

Ligands

8 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 18 residues within 4Å: Chain A: E.101, W.104, L.105, R.111, E.150, Q.151, L.153, V.154, R.158, H.191, K.194, S.317, D.318, Q.321, G.322, R.323, G.324, D.327 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:W.104, A:W.104 Hydrogen bonds: A:R.111, A:R.111, A:Q.151, A:L.153, A:L.153, A:H.191, A:S.317, A:G.324 Salt bridges: A:R.111, A:R.111, A:R.158, A:K.194, A:K.194 NAD.2: 18 residues within 4Å: Chain B: E.101, W.104, L.105, R.111, E.150, Q.151, L.153, V.154, R.158, H.191, K.194, S.317, D.318, Q.321, G.322, R.323, G.324, D.327 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:W.104, B:W.104 Hydrogen bonds: B:R.111, B:R.111, B:Q.151, B:L.153, B:L.153, B:H.191, B:S.317, B:G.324 Salt bridges: B:R.111, B:R.111, B:R.158, B:K.194, B:K.194 NAD.3: 18 residues within 4Å: Chain C: E.101, W.104, L.105, R.111, E.150, Q.151, L.153, V.154, R.158, H.191, K.194, S.317, D.318, Q.321, G.322, R.323, G.324, D.327 15 PLIP interactions: 15 interactions with chain C Hydrophobic interactions: C:W.104, C:W.104 Hydrogen bonds: C:R.111, C:R.111, C:Q.151, C:L.153, C:L.153, C:H.191, C:S.317, C:G.324 Salt bridges: C:R.111, C:R.111, C:R.158, C:K.194, C:K.194 NAD.4: 18 residues within 4Å: Chain D: E.101, W.104, L.105, R.111, E.150, Q.151, L.153, V.154, R.158, H.191, K.194, S.317, D.318, Q.321, G.322, R.323, G.324, D.327 15 PLIP interactions: 15 interactions with chain D Hydrophobic interactions: D:W.104, D:W.104 Hydrogen bonds: D:R.111, D:R.111, D:Q.151, D:L.153, D:L.153, D:H.191, D:S.317, D:G.324 Salt bridges: D:R.111, D:R.111, D:R.158, D:K.194, D:K.194 NAD.5: 18 residues within 4Å: Chain E: E.101, W.104, L.105, R.111, E.150, Q.151, L.153, V.154, R.158, H.191, K.194, S.317, D.318, Q.321, G.322, R.323, G.324, D.327 15 PLIP interactions: 15 interactions with chain E Hydrophobic interactions: E:W.104, E:W.104 Hydrogen bonds: E:R.111, E:R.111, E:Q.151, E:L.153, E:L.153, E:H.191, E:S.317, E:G.324 Salt bridges: E:R.111, E:R.111, E:R.158, E:K.194, E:K.194 NAD.6: 18 residues within 4Å: Chain F: E.101, W.104, L.105, R.111, E.150, Q.151, L.153, V.154, R.158, H.191, K.194, S.317, D.318, Q.321, G.322, R.323, G.324, D.327 15 PLIP interactions: 15 interactions with chain F Hydrophobic interactions: F:W.104, F:W.104 Hydrogen bonds: F:R.111, F:R.111, F:Q.151, F:L.153, F:L.153, F:H.191, F:S.317, F:G.324 Salt bridges: F:R.111, F:R.111, F:R.158, F:K.194, F:K.194 NAD.7: 18 residues within 4Å: Chain G: E.101, W.104, L.105, R.111, E.150, Q.151, L.153, V.154, R.158, H.191, K.194, S.317, D.318, Q.321, G.322, R.323, G.324, D.327 15 PLIP interactions: 15 interactions with chain G Hydrophobic interactions: G:W.104, G:W.104 Hydrogen bonds: G:R.111, G:R.111, G:Q.151, G:L.153, G:L.153, G:H.191, G:S.317, G:G.324 Salt bridges: G:R.111, G:R.111, G:R.158, G:K.194, G:K.194 NAD.8: 18 residues within 4Å: Chain H: E.101, W.104, L.105, R.111, E.150, Q.151, L.153, V.154, R.158, H.191, K.194, S.317, D.318, Q.321, G.322, R.323, G.324, D.327 15 PLIP interactions: 15 interactions with chain H Hydrophobic interactions: H:W.104, H:W.104 Hydrogen bonds: H:R.111, H:R.111, H:Q.151, H:L.153, H:L.153, H:H.191, H:S.317, H:G.324 Salt bridges: H:R.111, H:R.111, H:R.158, H:K.194, H:K.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sporny, M. et al., Structural basis for SARM1 inhibition and activation under energetic stress. Elife (2020)

Release Date

2020-11-11

Peptides

NAD(+) hydrolase SARM1: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

NAD(+) hydrolase SARM1