- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x AHD: 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.2: 9 residues within 4Å:- Chain A: V.80, N.103, F.107, I.181, G.182, V.183, W.186, L.216
- Ligands: AHD.1
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:V.80, A:F.107, A:I.181, A:W.186, A:L.216
- Hydrogen bonds: A:N.103, A:I.181
- Water bridges: A:N.103
MPD.3: 7 residues within 4Å:- Chain A: F.174, R.175, V.178, R.210, R.214
- Chain B: E.171, R.175
6 PLIP interactions:3 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:E.171, B:R.175, A:R.210
- Water bridges: B:R.175
- Hydrophobic interactions: A:F.174, A:V.178
MPD.12: 5 residues within 4Å:- Chain A: E.137, E.140, V.141
- Chain B: E.140, E.144
5 PLIP interactions:2 interactions with chain A, 3 interactions with chain B- Hydrophobic interactions: A:E.140, A:V.141, B:E.140, B:E.144
- Water bridges: B:E.140
MPD.14: 9 residues within 4Å:- Chain B: V.80, N.103, I.181, G.182, W.186, L.216, N.285, W.288
- Ligands: AHD.13
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:V.80, B:I.181, B:W.186, B:L.216
- Hydrogen bonds: B:N.103, B:N.103
- Water bridges: B:N.285
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 5 residues within 4Å:- Chain A: R.177, N.220, S.224, E.228
- Ligands: AHD.1
3 PLIP interactions:2 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:S.224, A:E.228, H2O.2
MG.5: 4 residues within 4Å:- Chain A: D.110, R.227
- Ligands: AHD.1, MG.6
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.110, H2O.2, H2O.2, H2O.2
MG.6: 3 residues within 4Å:- Chain A: D.110
- Ligands: AHD.1, MG.5
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:D.110, H2O.1, H2O.1, H2O.2, H2O.3
MG.8: 4 residues within 4Å:- Chain B: D.110, R.227
- Ligands: MG.9, AHD.13
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.110, H2O.12, H2O.12, H2O.13
MG.9: 3 residues within 4Å:- Chain B: D.110
- Ligands: MG.8, AHD.13
5 PLIP interactions:1 interactions with chain B, 4 Ligand-Water interactions- Metal complexes: B:D.110, H2O.10, H2O.12, H2O.12, H2O.12
MG.10: 5 residues within 4Å:- Chain B: R.177, N.220, S.224, E.228
- Ligands: AHD.13
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:S.224, B:E.228, H2O.11
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Raz, K. et al., The Impression of a Nonexisting Catalytic Effect: The Role of CotB2 in Guiding the Complex Biosynthesis of Cyclooctat-9-en-7-ol. J.Am.Chem.Soc. (2020)
- Release Date
- 2020-12-02
- Peptides
- Cyclooctat-9-en-7-ol synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.45 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x AHD: 4-AMINO-1-HYDROXYBUTANE-1,1-DIYLDIPHOSPHONATE(Non-covalent)
- 4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Raz, K. et al., The Impression of a Nonexisting Catalytic Effect: The Role of CotB2 in Guiding the Complex Biosynthesis of Cyclooctat-9-en-7-ol. J.Am.Chem.Soc. (2020)
- Release Date
- 2020-12-02
- Peptides
- Cyclooctat-9-en-7-ol synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B