- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.64 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x TRP: TRYPTOPHAN(Non-covalent)
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 13 x FMT: FORMIC ACID(Non-functional Binders)
FMT.4: 7 residues within 4Å:- Chain A: S.134, M.135, T.136, D.141, K.143, H.187, T.188
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:M.135, A:T.136, A:K.143, A:T.188
FMT.5: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)FMT.8: 5 residues within 4Å:- Chain A: R.388, N.390, K.403, G.478, D.479
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.388, A:K.403
- Water bridges: A:D.479
FMT.9: 3 residues within 4Å:- Chain A: D.137, V.185, Y.246
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:D.137
- Water bridges: A:D.137, A:N.442, A:N.442
FMT.12: 3 residues within 4Å:- Chain A: D.353, K.354, D.357
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.353, A:D.353
FMT.13: 4 residues within 4Å:- Chain A: K.447, W.448, D.475, S.477
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:S.477
FMT.15: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)FMT.20: 5 residues within 4Å:- Chain B: V.521, K.525, I.529, N.530, L.531
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.521, B:N.530, B:L.531
FMT.21: 3 residues within 4Å:- Chain B: F.606, V.607
- Ligands: B3P.16
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.607
- Water bridges: B:T.605
FMT.25: 1 residues within 4Å:- Chain B: E.559
2 PLIP interactions:2 interactions with chain B- Water bridges: B:E.559, B:E.559
FMT.26: 3 residues within 4Å:- Chain B: Q.564, G.565, D.609
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.564
- Water bridges: B:Q.564, B:G.565
FMT.27: 4 residues within 4Å:- Chain B: T.294, L.295, G.296, S.298
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:T.294
FMT.28: 10 residues within 4Å:- Chain B: S.331, S.332, D.333, F.385, D.386, G.387, R.388, G.389, N.390, M.406
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:S.332, B:D.333, B:D.386, B:D.386, B:G.387, B:R.388, B:G.389
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
CUA.7: 7 residues within 4Å:- Chain A: D.583, C.618, W.620, F.621, C.622, H.626, M.629
6 PLIP interactions:6 interactions with chain A- Metal complexes: A:C.618, A:C.618, A:W.620, A:C.622, A:C.622, A:H.626
CUA.24: 7 residues within 4Å:- Chain B: A.552, D.583, C.618, W.620, C.622, H.626, M.629
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:C.618, B:C.618, B:C.622, B:C.622, B:H.626
- 2 x ZN: ZINC ION(Non-covalent)
ZN.10: 5 residues within 4Å:- Chain A: H.326, H.382, H.433, H.494
- Ligands: ZN.11
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.326, A:H.382, H2O.15, H2O.16
ZN.11: 5 residues within 4Å:- Chain A: H.130, N.241, H.433, H.494
- Ligands: ZN.10
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.130, A:H.433, A:H.494, H2O.15
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x K: POTASSIUM ION(Non-covalent)
- 1 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-01-13
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.64 Å
- Oligo State
- homo-dimer
- Ligands
- 1 x TRP: TRYPTOPHAN(Non-covalent)
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 13 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 1 x CA: CALCIUM ION(Non-covalent)
- 1 x K: POTASSIUM ION(Non-covalent)
- 1 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-01-13
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B