- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.71 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.3: 5 residues within 4Å:- Chain A: Y.256, E.259, M.267, D.273, N.324
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:Y.256, A:E.259, A:E.259, A:M.267, A:D.273
CA.17: 5 residues within 4Å:- Chain B: Y.256, E.259, M.267, D.273, N.324
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.259, B:E.259, B:M.267, B:D.273, B:D.273
- 10 x FMT: FORMIC ACID(Non-functional Binders)
FMT.4: 3 residues within 4Å:- Chain A: Y.429, D.458, R.459
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.458, A:R.459
FMT.5: 6 residues within 4Å:- Chain A: S.134, M.135, D.141, K.143, H.187, T.188
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:T.136, A:K.143, A:T.188, A:T.188
FMT.6: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)FMT.7: 0 residues within 4Å:- (No contacts)
2 PLIP interactions:2 interactions with chain A- Water bridges: A:F.292, A:I.293
FMT.10: 4 residues within 4Å:- Chain A: R.388, N.390, K.403, D.479
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.388, A:K.403, A:D.479
FMT.14: 3 residues within 4Å:- Chain A: G.310, K.311, D.312
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.312, A:D.312
FMT.19: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)FMT.20: 5 residues within 4Å:- Chain B: V.521, K.525, I.529, N.530, L.531
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.521, B:N.530, B:L.531
FMT.21: 3 residues within 4Å:- Chain B: F.606, V.607
- Ligands: B3P.15
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:V.607
- Water bridges: B:T.605
FMT.25: 3 residues within 4Å:- Chain B: A.518, P.519, E.522
No protein-ligand interaction detected (PLIP)- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
CUA.9: 7 residues within 4Å:- Chain A: E.583, C.618, W.620, F.621, C.622, H.626, M.629
7 PLIP interactions:7 interactions with chain A- Metal complexes: A:E.583, A:C.618, A:C.618, A:W.620, A:C.622, A:C.622, A:H.626
CUA.23: 7 residues within 4Å:- Chain B: E.583, C.618, W.620, F.621, C.622, H.626, M.629
6 PLIP interactions:6 interactions with chain B- Metal complexes: B:C.618, B:C.618, B:W.620, B:C.622, B:C.622, B:H.626
- 2 x ZN: ZINC ION(Non-covalent)
ZN.11: 5 residues within 4Å:- Chain A: H.326, H.382, H.433, H.494
- Ligands: ZN.12
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.326, A:H.382, H2O.11, H2O.17
ZN.12: 5 residues within 4Å:- Chain A: H.130, N.241, H.433, H.494
- Ligands: ZN.11
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.130, A:H.433, A:H.494, H2O.1, H2O.11
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 1 x K: POTASSIUM ION(Non-covalent)
- 1 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-01-13
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.71 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
- 10 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 1 x K: POTASSIUM ION(Non-covalent)
- 1 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-01-13
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B