- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: Y.256, D.273, K.323, N.324
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:Y.256, A:D.273, A:D.273
CA.18: 5 residues within 4Å:- Chain B: Y.256, E.259, M.267, D.273, N.324
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.259, B:E.259, B:M.267, B:D.273, B:D.273
- 2 x K: POTASSIUM ION(Non-covalent)
- 9 x FMT: FORMIC ACID(Non-functional Binders)
FMT.5: 1 residues within 4Å:- Chain A: K.525
No protein-ligand interaction detected (PLIP)FMT.6: 7 residues within 4Å:- Chain A: S.134, M.135, T.136, D.141, K.143, H.187, T.188
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:M.135, A:T.136, A:K.143, A:T.188
FMT.7: 0 residues within 4Å:- (No contacts)
No protein-ligand interaction detected (PLIP)FMT.8: 2 residues within 4Å:- Chain A: D.291, F.292
1 PLIP interactions:1 interactions with chain A- Water bridges: A:I.293
FMT.13: 4 residues within 4Å:- Chain A: R.388, N.390, K.403, D.479
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:R.388, A:N.390, A:K.403, A:G.478, A:D.479
FMT.15: 1 residues within 4Å:- Chain A: H.623
2 PLIP interactions:2 interactions with chain A- Water bridges: A:H.623, A:H.623
FMT.20: 5 residues within 4Å:- Chain B: V.521, K.525, I.529, N.530, L.531
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.529, B:N.530, B:L.531
FMT.21: 3 residues within 4Å:- Chain B: F.606, V.607
- Ligands: B3P.16
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:V.607
FMT.25: 2 residues within 4Å:- Chain A: V.581
- Chain B: F.455
No protein-ligand interaction detected (PLIP)- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
CUA.10: 7 residues within 4Å:- Chain A: Y.583, C.618, W.620, F.621, C.622, H.626, M.629
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:C.618, A:W.620, A:C.622, A:C.622, A:H.626
CUA.24: 7 residues within 4Å:- Chain B: Y.583, C.618, W.620, F.621, C.622, H.626, M.629
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.618, B:W.620, B:C.622, B:C.622
- 2 x ZN: ZINC ION(Non-covalent)
ZN.11: 5 residues within 4Å:- Chain A: H.326, H.382, H.433, H.494
- Ligands: ZN.12
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.326, A:H.382, H2O.11, H2O.14
ZN.12: 4 residues within 4Å:- Chain A: H.130, H.433, H.494
- Ligands: ZN.11
5 PLIP interactions:3 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.130, A:H.433, A:H.494, H2O.1, H2O.11
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 1 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-01-13
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.79 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B3P: 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)
- 2 x NA: SODIUM ION(Non-functional Binders)
- 2 x CA: CALCIUM ION(Non-covalent)
- 2 x K: POTASSIUM ION(Non-covalent)
- 9 x FMT: FORMIC ACID(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x CUA: DINUCLEAR COPPER ION(Non-covalent)
- 2 x ZN: ZINC ION(Non-covalent)
- 1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 1 x CUZ: (MU-4-SULFIDO)-TETRA-NUCLEAR COPPER ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zhang, L. et al., Histidine-Gated Proton-Coupled Electron Transfer to the Cu A Site of Nitrous Oxide Reductase. J.Am.Chem.Soc. (2021)
- Release Date
- 2021-01-13
- Peptides
- Nitrous-oxide reductase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B