SMTL ID : 7aqy.1

Co-Crystal Structure of Variant Surface Glycoprotein VSG2 in complex with Nanobody VSG2(NB11)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 11 residues within 4Å: Chain A: K.38, K.41, M.42, A.45, R.48, Y.72, N.263, E.313, S.317, G.335, E.336 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:E.313 Hydrogen bonds: A:R.48, A:S.317, A:S.317 Water bridges: A:R.48, A:R.48, A:E.313, A:S.317 NAG-NAG-BMA.2: 11 residues within 4Å: Chain C: K.38, K.41, M.42, A.45, R.48, Y.72, N.263, E.313, S.317, G.335, E.336 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:E.313 Hydrogen bonds: C:R.48, C:S.317, C:S.317 Water bridges: C:R.48, C:E.313, C:S.317

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hempelmann, A. et al., Nanobody-mediated macromolecular crowding induces membrane fission and remodeling in the African trypanosome. Cell Rep (2021)

Release Date

2021-11-03

Peptides

Variant surface glycoprotein MITAT 1.2: AC
Nanobody VSG2(NB11): BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
D

D
C

Variant surface glycoprotein MITAT 1.2

Nanobody VSG2(NB11)

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