SMTL ID : 7as4.1

Recombinant human gTuRC

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-14-6-2-2-1-5-2-1-mer

Ligands

14 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 14 residues within 4Å: Chain A: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.12, A:N.102, A:S.140, A:A.142, A:T.145, A:Q.175, A:N.207, A:N.207, A:N.229 GDP.2: 14 residues within 4Å: Chain B: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:Q.12, B:N.102, B:S.140, B:A.142, B:T.145, B:Q.175, B:N.207, B:N.229 GDP.3: 14 residues within 4Å: Chain V: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 8 PLIP interactions: 8 interactions with chain V Hydrogen bonds: V:Q.12, V:N.102, V:S.140, V:A.142, V:T.145, V:Q.175, V:N.207, V:N.229 GDP.4: 15 residues within 4Å: Chain W: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, V.171, P.173, Q.175, N.207, F.225, N.229 10 PLIP interactions: 10 interactions with chain W Hydrogen bonds: W:C.13, W:N.102, W:S.140, W:A.142, W:T.145, W:T.145, W:Q.175, W:N.207, W:N.229 pi-Stacking: W:F.225 GDP.5: 14 residues within 4Å: Chain X: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 8 PLIP interactions: 8 interactions with chain X Hydrogen bonds: X:Q.12, X:N.102, X:S.140, X:A.142, X:T.145, X:Q.175, X:N.207, X:N.229 GDP.6: 15 residues within 4Å: Chain Y: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, V.171, P.173, Q.175, N.207, F.225, N.229 10 PLIP interactions: 10 interactions with chain Y Hydrogen bonds: Y:Q.12, Y:C.13, Y:N.102, Y:S.140, Y:A.142, Y:T.145, Y:Q.175, Y:N.207, Y:N.229 pi-Stacking: Y:F.225 GDP.7: 14 residues within 4Å: Chain Z: Q.12, C.13, Q.16, N.102, S.140, G.143, G.144, T.145, V.171, P.173, Q.175, N.207, F.225, N.229 7 PLIP interactions: 7 interactions with chain Z Hydrogen bonds: Z:Q.12, Z:N.102, Z:S.140, Z:T.145, Z:Q.175, Z:N.207, Z:N.229 GDP.8: 14 residues within 4Å: Chain 0: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 9 PLIP interactions: 9 interactions with chain 0 Hydrogen bonds: 0:Q.12, 0:N.102, 0:S.140, 0:A.142, 0:T.145, 0:Q.175, 0:N.207, 0:N.229 pi-Stacking: 0:F.225 GDP.9: 14 residues within 4Å: Chain 1: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 9 PLIP interactions: 9 interactions with chain 1 Hydrogen bonds: 1:Q.12, 1:N.102, 1:S.140, 1:A.142, 1:T.145, 1:Q.175, 1:N.207, 1:N.207, 1:N.229 GDP.10: 14 residues within 4Å: Chain 2: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 7 PLIP interactions: 7 interactions with chain 2 Hydrogen bonds: 2:Q.12, 2:S.140, 2:A.142, 2:T.145, 2:Q.175, 2:N.207, 2:N.229 GDP.11: 14 residues within 4Å: Chain 3: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 7 PLIP interactions: 7 interactions with chain 3 Hydrogen bonds: 3:Q.12, 3:S.140, 3:A.142, 3:T.145, 3:Q.175, 3:N.207, 3:N.229 GDP.12: 14 residues within 4Å: Chain 4: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 7 PLIP interactions: 7 interactions with chain 4 Hydrogen bonds: 4:Q.12, 4:S.140, 4:A.142, 4:T.145, 4:Q.175, 4:N.207, 4:N.229 GDP.13: 14 residues within 4Å: Chain 5: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 8 PLIP interactions: 8 interactions with chain 5 Hydrogen bonds: 5:Q.12, 5:S.140, 5:A.142, 5:T.145, 5:Q.175, 5:N.207, 5:N.207, 5:N.229 GDP.14: 14 residues within 4Å: Chain 6: Q.12, C.13, Q.16, N.102, S.140, A.142, G.143, G.144, T.145, P.173, Q.175, N.207, F.225, N.229 7 PLIP interactions: 7 interactions with chain 6 Hydrogen bonds: 6:Q.12, 6:S.140, 6:A.142, 6:T.145, 6:Q.175, 6:N.207, 6:N.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zimmermann, F. et al., Assembly of the asymmetric human gamma-tubulin ring complex by RUVBL1-RUVBL2 AAA ATPase. Sci Adv (2020)

Release Date

2021-01-20

Peptides

Tubulin gamma-1 chain: ABVWXYZ0123456
Gamma-tubulin complex component 3: CIKMOU
Gamma-tubulin complex component 6: DS
Mitotic-spindle organizing protein 1: EF
Actin, cytoplasmic 1: G
Gamma-tubulin complex component 2: HJLNT
Gamma-tubulin complex component 4: PR
Gamma-tubulin complex component 5: Q

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

B
2

V
O

W
P

X
Q

Y
R

Z
S

0
T

1
U

2
V

3
W

4
X

5
Y

6
Z

C
3

I
B

K
D

M
F

O
H

U
N

D
4

S
L

E
5

F
6

G
7

H
A

J
C

L
E

N
G

T
M

P
I

R
K

Q
J

Tubulin gamma-1 chain

Gamma-tubulin complex component 3

Gamma-tubulin complex component 6

Mitotic-spindle organizing protein 1

Actin, cytoplasmic 1

Gamma-tubulin complex component 2

Gamma-tubulin complex component 4

Gamma-tubulin complex component 5

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