SMTL ID : 7as6.1 (1 other biounit)

2.0 angstrom structure of plant Extended Synaptotagmin 1, C2A domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x CD: CADMIUM ION(Non-covalent)

CD.1: 5 residues within 4Å: Chain A: D.24, D.30, D.80, W.81, E.82 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.24, A:D.30, A:D.80, A:W.81, A:E.82 CD.2: 1 residues within 4Å: Chain A: H.51 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.51, H2O.1

2 x NI: NICKEL (II) ION(Non-covalent)

NI.3: 1 residues within 4Å: Chain A: H.105 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.105 NI.4: 2 residues within 4Å: Chain A: H.11, E.61 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.61

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: T.48, V.49 Ligand excluded by PLIP

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 3 residues within 4Å: Chain A: K.50, N.53, E.57 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.50, A:N.53, A:E.57 EDO.7: 5 residues within 4Å: Chain A: K.46, T.47, E.60, E.61, F.62 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.60, A:E.60 Water bridges: A:E.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Benavente, J.L. et al., The structure and flexibility analysis of the Arabidopsis synaptotagmin 1 reveal the basis of its regulation at membrane contact sites. Life Sci Alliance (2021)

Release Date

2021-08-18

Peptides

Synaptotagmin-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Synaptotagmin-1

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