SMTL ID : 7atd.1 (1 other biounit)

Structure of inactive EstD11 S144A in complex with methyl-naproxen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

13 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 3 residues within 4Å: Chain A: V.49, W.58, W.127 No protein-ligand interaction detected (PLIP) FMT.2: 4 residues within 4Å: Chain A: E.45, L.46, T.47 Ligands: FMT.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.47 Water bridges: A:E.45, A:L.46 FMT.3: 4 residues within 4Å: Chain A: L.46, T.47, T.48 Ligands: FMT.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.48 FMT.4: 4 residues within 4Å: Chain A: R.107, E.111, H.112, P.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.107, A:H.112 Water bridges: A:E.111 FMT.5: 3 residues within 4Å: Chain A: R.68, R.292, Q.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.68, A:R.68 FMT.6: 4 residues within 4Å: Chain A: P.22, T.23, R.201, M.205 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.24, A:R.201 FMT.8: 4 residues within 4Å: Chain A: T.47, W.58, R.60, R.100 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.47, A:R.60, A:R.100 Water bridges: A:T.47 FMT.9: 3 residues within 4Å: Chain A: R.68, W.295, Q.296 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.68, A:Q.296 FMT.10: 1 residues within 4Å: Chain A: R.286 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.286, A:R.286, A:R.286 FMT.11: 2 residues within 4Å: Chain A: V.245, P.262 No protein-ligand interaction detected (PLIP) FMT.12: 2 residues within 4Å: Chain A: R.84, R.87 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.87, A:R.87 FMT.13: 2 residues within 4Å: Chain A: R.225, G.226 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.226 FMT.14: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.7: 7 residues within 4Å: Chain A: G.75, G.76, G.77, A.144, A.145, L.199, H.268 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.144 Hydrogen bonds: A:G.76, A:G.77, A:A.145 Salt bridges: A:H.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miguel-Ruano, V. et al., Biochemical and Structural Characterization of a novel thermophilic esterase EstD11 provide catalytic insights for the HSL family. Comput Struct Biotechnol J (2021)

Release Date

2021-03-03

Peptides

EstD11 S144A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

EstD11 S144A

Related Entries With Identical Sequence