SMTL ID : 7atm.1

Structure of P. aeruginosa PBP3 in complex with a phenyl boronic acid (Compound 1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.58 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: N.351, H.352, R.353, K.354 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:H.352, A:R.353, A:K.354, A:K.354 Water bridges: A:N.351, A:H.352

1 x RY2: (3-(1H-tetrazol-5-yl)phenyl)boronic acid(Covalent)

RY2.2: 13 residues within 4Å: Chain A: S.252, K.255, V.291, S.307, K.442, S.443, G.444, T.445, Y.490, F.491, G.492, G.493 Ligands: DMS.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.291 Hydrogen bonds: A:Y.490, A:G.492, A:G.493

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 6 residues within 4Å: Chain A: V.291, I.305, K.306, S.307, Y.490 Ligands: RY2.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newman, H. et al., High-Throughput Crystallography Reveals Boron-Containing Inhibitors of a Penicillin-Binding Protein with Di- and Tricovalent Binding Modes. J.Med.Chem. (2021)

Release Date

2021-08-11

Peptides

Peptidoglycan D,D-transpeptidase FtsI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidoglycan D,D-transpeptidase FtsI

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