SMTL ID : 7ato.1

Structure of P. aeruginosa PBP3 in complex with an aryl boronic acid (Compound 2)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.59 Å

Oligo State

monomer

Ligands

1 x RXW: (5-methyl-1H-indazol-6-yl)boronic acid(Covalent)

RXW.1: 12 residues within 4Å: Chain A: S.252, K.255, S.307, N.309, K.442, S.443, G.444, T.445, F.491, G.492, G.493 Ligands: DMS.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.443, A:G.493

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 7 residues within 4Å: Chain A: I.305, K.306, S.307, S.443, F.491, L.494 Ligands: RXW.1 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: Q.405, V.406, I.407, S.408, P.409 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.406 Water bridges: A:S.408

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Newman, H. et al., High-Throughput Crystallography Reveals Boron-Containing Inhibitors of a Penicillin-Binding Protein with Di- and Tricovalent Binding Modes. J.Med.Chem. (2021)

Release Date

2021-08-11

Peptides

Peptidoglycan D,D-transpeptidase FtsI: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidoglycan D,D-transpeptidase FtsI

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