SMTL ID : 7au2.1

Cryo-EM structure of human exostosin-like 3 (EXTL3)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: Y.560, N.563, L.584 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.560 Hydrogen bonds: A:R.559 NAG-NAG.3: 3 residues within 4Å: Chain B: Y.560, N.563, L.584 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.560 Hydrogen bonds: B:R.559

2 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.2: 11 residues within 4Å: Chain A: D.750, H.753, S.755, W.756, L.757, N.759, S.760, N.761, F.844, H.848, N.852 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.750, A:S.755, A:W.756 NAG-NAG-BMA-MAN.4: 11 residues within 4Å: Chain B: D.750, H.753, S.755, W.756, L.757, N.759, S.760, N.761, F.844, H.848, N.852 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.750, B:S.755, B:W.756

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilson, L.F.L. et al., The structure of EXTL3 helps to explain the different roles of bi-domain exostosins in heparan sulfate synthesis. Nat Commun (2022)

Release Date

2022-05-18

Peptides

Exostosin-like 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Exostosin-like 3

Related Entries With Identical Sequence