SMTL ID : 7au7.1

Crystal structure of Nod Factor Perception ectodomain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 5 residues within 4Å: Chain A: N.70, F.71, L.72, S.73, N.76 No protein-ligand interaction detected (PLIP)

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.2: 5 residues within 4Å: Chain A: N.123, T.125, F.154, K.168, S.170 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.168 NAG-NAG.4: 5 residues within 4Å: Chain A: T.227, N.228 Ligands: NAG-NAG-BMA-MAN.3, NAG-NAG-BMA-MAN.3, NAG-NAG-BMA-MAN.3 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.3: 6 residues within 4Å: Chain A: I.139, Q.143, N.144, N.228 Ligands: NAG-NAG.4, NAG-NAG.4 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 5 residues within 4Å: Chain A: S.44, E.45, T.46, N.47, N.220 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.47, A:N.220 NAG.6: 3 residues within 4Å: Chain A: N.198, D.199, N.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.198, A:N.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gysel, K. et al., Kinetic proofreading of lipochitooligosaccharides determines signal activation of symbiotic plant receptors. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-11-10

Peptides

Serine/threonine receptor-like kinase NFP: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Serine/threonine receptor-like kinase NFP