SMTL ID : 7aug.1

Crystal structure of rsGCamP1.3 in the ON state

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: D.395, D.397, D.399, Q.401, E.406 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.395, A:Q.401, A:E.406, A:E.406, H2O.2 CA.2: 5 residues within 4Å: Chain A: D.286, D.288, D.290, T.292, E.297 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.286, A:D.288, A:T.292, A:E.297, H2O.7 CA.3: 6 residues within 4Å: Chain A: D.322, D.324, D.326, T.328, D.330, E.333 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.322, A:D.326, A:D.330, A:E.333, H2O.1 CA.4: 5 residues within 4Å: Chain A: D.359, D.361, N.363, Y.365, E.370 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.359, A:Y.365, A:E.370, A:E.370, H2O.1 CA.5: 4 residues within 4Å: Chain A: F.45, R.46, R.340 Ligands: FMT.10 No protein-ligand interaction detected (PLIP) CA.6: 2 residues within 4Å: Chain A: S.83, Y.344 No protein-ligand interaction detected (PLIP) CA.7: 2 residues within 4Å: Chain A: E.128, F.131 No protein-ligand interaction detected (PLIP) CA.8: 6 residues within 4Å: Chain A: N.42, F.43, Y.58, H.59, Y.60 Ligands: EDO.32 No protein-ligand interaction detected (PLIP)

19 x FMT: FORMIC ACID(Non-functional Binders)

FMT.9: 3 residues within 4Å: Chain A: R.230, R.243, E.245 Ligand excluded by PLIP FMT.10: 9 residues within 4Å: Chain A: E.26, N.27, V.28, K.44, F.45, T.81, X.188, R.340 Ligands: CA.5 Ligand excluded by PLIP FMT.11: 1 residues within 4Å: Chain A: Y.58 Ligand excluded by PLIP FMT.12: 4 residues within 4Å: Chain A: K.228, R.230, E.245, K.247 Ligand excluded by PLIP FMT.13: 3 residues within 4Å: Chain A: Y.60, E.216 Ligands: FMT.22 Ligand excluded by PLIP FMT.14: 6 residues within 4Å: Chain A: S.80, T.81, Q.82, F.101, V.102, T.103 Ligand excluded by PLIP FMT.15: 3 residues within 4Å: Chain A: Q.82, L.99, F.101 Ligand excluded by PLIP FMT.16: 2 residues within 4Å: Chain A: D.142, L.246 Ligand excluded by PLIP FMT.17: 7 residues within 4Å: Chain A: V.16, I.19, G.20, Q.307, E.353, A.354, V.357 Ligand excluded by PLIP FMT.18: 3 residues within 4Å: Chain A: Y.29, N.42 Ligands: EDO.32 Ligand excluded by PLIP FMT.19: 3 residues within 4Å: Chain A: Y.29, H.77, Y.78 Ligand excluded by PLIP FMT.20: 2 residues within 4Å: Chain A: R.93, T.172 Ligand excluded by PLIP FMT.21: 3 residues within 4Å: Chain A: G.237, D.238, T.239 Ligand excluded by PLIP FMT.22: 3 residues within 4Å: Chain A: T.218, K.228 Ligands: FMT.13 Ligand excluded by PLIP FMT.23: 1 residues within 4Å: Chain A: Y.162 Ligand excluded by PLIP FMT.24: 3 residues within 4Å: Chain A: L.138, E.236, T.239 Ligand excluded by PLIP FMT.25: 5 residues within 4Å: Chain A: K.34, N.37, P.70, V.71, L.73 Ligand excluded by PLIP FMT.26: 4 residues within 4Å: Chain A: R.356, D.359, K.360, G.362 Ligand excluded by PLIP FMT.27: 3 residues within 4Å: Chain A: L.130, F.235, G.237 Ligand excluded by PLIP

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.28: 6 residues within 4Å: Chain A: R.17, K.341, D.346, I.351, A.354, M.411 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.17, A:K.341, A:K.341 Water bridges: A:A.354 EDO.29: 10 residues within 4Å: Chain A: Y.78, A.105, G.106, I.107, H.198, N.319, D.322, A.323, D.324, G.325 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.78, A:G.106, A:N.319, A:G.325 EDO.30: 2 residues within 4Å: Chain A: D.324, D.330 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.324 EDO.31: 8 residues within 4Å: Chain A: P.65, I.66, G.67, D.68, G.69, A.208, E.211, G.212 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:I.66, A:G.67, A:G.69, A:G.212, A:G.212 Water bridges: A:G.69 EDO.32: 8 residues within 4Å: Chain A: L.25, Y.29, N.42, F.43, K.44, Y.58 Ligands: CA.8, FMT.18 No protein-ligand interaction detected (PLIP) EDO.33: 4 residues within 4Å: Chain A: E.140, D.142, R.243, I.244 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.243, A:I.244, A:I.244

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mishra, K. et al., Genetically encoded photo-switchable molecular sensors for optoacoustic and super-resolution imaging. Nat.Biotechnol. (2022)

Release Date

2021-10-27

Peptides

rsGCamP1.3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

rsGCamP1.3