SMTL ID : 7auk.1

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with 5-InsP7

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x I7P: (1r,2R,3S,4s,5R,6S)-2,3,4,5,6-pentakis(phosphonooxy)cyclohexyl trihydrogen diphosphate(Non-covalent)

I7P.1: 11 residues within 4Å: Chain A: R.35, S.55, S.56, I.63, K.66, G.67, E.87, R.105, R.132, R.155, R.174 32 PLIP interactions: 32 interactions with chain A Hydrogen bonds: A:S.55, A:S.55, A:S.56, A:E.87, A:R.105, A:R.132 Water bridges: A:R.35, A:R.35, A:R.35, A:R.35, A:S.56, A:A.57, A:A.57, A:H.58, A:K.66, A:G.68, A:G.68, A:E.87, A:T.133, A:R.174, A:R.174 Salt bridges: A:R.35, A:R.35, A:R.35, A:K.66, A:K.66, A:K.66, A:R.105, A:R.105, A:R.155, A:R.174, A:R.174

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marquez-Monino, M.A. et al., Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv (2021)

Release Date

2021-05-19

Peptides

Diphosphoinositol polyphosphate phosphohydrolase DDP1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Diphosphoinositol polyphosphate phosphohydrolase DDP1

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