SMTL ID : 7aun.1

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1 in complex with PCP-InsP8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x 4WZ: {[(1R,3S,4S,5R,6S)-2,4,5,6-tetrakis(phosphonooxy)cyclohexane-1,3-diyl]bis[oxy(hydroxyphosphoryl)methanediyl]}bis(phosphonic acid)(Non-covalent)

4WZ.1: 15 residues within 4Å: Chain A: R.35, V.37, S.55, S.56, H.58, I.63, K.66, G.67, G.68, E.83, E.87, R.105, R.155, R.174 Ligands: MG.2 21 PLIP interactions: 21 interactions with chain A Hydrogen bonds: A:R.35, A:S.55, A:S.56, A:S.56, A:S.56, A:G.68, A:R.155, A:R.174 Water bridges: A:K.66, A:K.66, A:R.82, A:R.155, A:R.155, A:R.174 Salt bridges: A:R.35, A:H.58, A:H.58, A:K.66, A:K.66, A:R.105, A:R.174

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.66, G.67, E.87 Ligands: 4WZ.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:K.66, A:E.87, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marquez-Monino, M.A. et al., Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv (2021)

Release Date

2021-05-19

Peptides

Diphosphoinositol polyphosphate phosphohydrolase DDP1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Diphosphoinositol polyphosphate phosphohydrolase DDP1

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