SMTL ID : 7auu.1

Yeast Diphosphoinositol Polyphosphate Phosphohydrolase DDP1-nose mutant in complex with InsP6

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

monomer

Ligands

1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)

IHP.1: 12 residues within 4Å: Chain A: R.35, S.55, S.56, A.57, I.63, K.66, G.67, E.87, R.112, R.135, R.154 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.55, A:S.55, A:S.56, A:A.57, A:R.112 Water bridges: A:R.35, A:R.35, A:K.66, A:K.66, A:K.66, A:R.135 Salt bridges: A:R.35, A:R.35, A:K.66, A:K.66, A:K.66, A:R.135, A:R.154, A:R.154

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.66, G.67, E.87 Ligands: IHP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:K.66, A:E.87, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marquez-Monino, M.A. et al., Multiple substrate recognition by yeast diadenosine and diphosphoinositol polyphosphate phosphohydrolase through phosphate clamping. Sci Adv (2021)

Release Date

2021-05-19

Peptides

Diphosphoinositol polyphosphate phosphohydrolase DDP1,Diphosphoinositol polyphosphate phosphohydrolase DDP1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Diphosphoinositol polyphosphate phosphohydrolase DDP1,Diphosphoinositol polyphosphate phosphohydrolase DDP1