SMTL ID : 7av4.1

Dark state structure of the C432S mutant of Fatty Acid Photodecarboxylase (FAP)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

2 x STE: STEARIC ACID(Non-covalent)

STE.1: 20 residues within 4Å: Chain A: A.128, T.131, F.134, A.171, I.400, S.429, T.430, G.431, R.451, V.453, G.455, M.456, A.457, G.462, T.465, Y.466, F.469, T.484, Q.486, N.575 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.134, A:I.400, A:V.453, A:V.453, A:T.465, A:Y.466, A:F.469, A:F.469, A:T.484 Hydrogen bonds: A:N.575 Water bridges: A:S.432, A:R.451, A:R.451, A:R.451, A:S.573 Salt bridges: A:R.451 STE.2: 14 residues within 4Å: Chain A: R.122, K.125, I.126, A.128, A.129, T.131, R.132, T.272, I.404, Y.405, I.416, Y.419, L.420, F.469 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:K.125, A:I.404, A:I.416, A:Y.419, A:L.420, A:F.469 Hydrogen bonds: A:Y.419

1 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.3: 41 residues within 4Å: Chain A: G.90, G.92, T.93, A.94, L.113, E.114, A.115, F.134, W.140, A.158, R.159, G.160, R.161, L.162, G.165, S.166, S.167, T.169, N.170, A.171, T.172, L.173, M.267, A.296, A.297, V.298, C.340, A.341, G.342, H.345, L.349, N.575, A.576, D.609, A.610, Q.620, T.621, G.622, A.623, V.625 Ligands: GOL.5 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:F.134, A:A.158, A:N.170, A:N.575 Hydrogen bonds: A:T.93, A:T.93, A:A.94, A:A.115, A:G.160, A:L.162, A:S.166, A:S.166, A:N.170, A:A.171, A:L.173, A:L.173, A:V.298, A:V.298, A:A.576, A:A.610, A:T.621, A:T.621, A:G.622, A:A.623 Water bridges: A:G.92, A:A.95, A:R.159, A:R.159, A:R.159, A:S.166, A:S.166, A:N.575

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain A: R.135, F.143, Y.156, V.463, S.464 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.135 GOL.5: 9 residues within 4Å: Chain A: W.140, A.297, H.345, F.348, L.349, P.505, F.506, A.507 Ligands: FAD.3 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sorigue, D. et al., Mechanism and dynamics of fatty acid photodecarboxylase. Science (2021)

Release Date

2021-04-21

Peptides

Fatty acid photodecarboxylase, chloroplastic: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Fatty acid photodecarboxylase, chloroplastic