SMTL ID : 7avw.1

X-RAY CRYSTAL STRUCTURE OF THE CsPYL1-iSB07-HAB1 TERNARY COMPLEX

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x S5N: N-((1,4-dimethyl-2-oxo-1,2-dihydroquinolin-6-yl)methyl)benzenesulfonamide(Non-covalent)

S5N.1: 19 residues within 4Å: Chain A: K.88, H.89, F.90, I.91, R.108, V.110, V.112, L.116, A.118, S.121, E.123, F.137, I.139, H.144, L.146, Y.149, F.188, V.192, N.196 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.112, A:A.118, A:F.137, A:H.144, A:Y.149, A:V.192 Hydrogen bonds: A:R.108, A:E.123 Water bridges: A:K.88, A:N.196

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: D.131 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.131 GOL.3: 5 residues within 4Å: Chain A: T.191, L.195 Chain B: F.213, Y.226, Y.230 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.226, B:Y.230, A:T.191 GOL.12: 5 residues within 4Å: Chain B: W.257, D.258, V.259, M.260, N.261 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.258, B:M.260 Water bridges: B:N.262

4 x MN: MANGANESE (II) ION(Non-covalent)

MN.4: 2 residues within 4Å: Chain B: D.254, D.258 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.258, B:D.258, H2O.6, H2O.7, H2O.7 MN.5: 3 residues within 4Å: Chain B: D.120, E.124, G.223 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.120, B:E.124, B:G.223, H2O.4, H2O.7 MN.6: 3 residues within 4Å: Chain B: D.65, G.66 Ligands: MN.7 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:G.66, H2O.2, H2O.3, H2O.4, H2O.5 MN.7: 4 residues within 4Å: Chain B: D.65, D.254, D.314 Ligands: MN.6 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.65, B:D.314, H2O.3, H2O.4, H2O.4

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 3 residues within 4Å: Chain B: R.271, R.272, Y.302 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: R.21, S.22 Ligand excluded by PLIP CL.10: 2 residues within 4Å: Chain B: M.275, W.276 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain B: G.69, H.70, K.71 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Albert, A. et al., X-RAY CRYSTAL STRUCTURE OF THE CsPYL1-Lig2-HAB1 TERNARY COMPLEX. To Be Published

Release Date

2023-01-18

Peptides

CsPYL1: A
Protein phosphatase 2C 16: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

CsPYL1

Protein phosphatase 2C 16

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